› 1tn1

X-ray diffraction
3Å resolution

CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA

Released:
DOI: 10.2210/pdb1tn1/pdb
PDB entry 1tn1 coloured by chain, front view.
PDB entry 1tn1 coloured by chain, side view.
PDB entry 1tn1 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA.
Brown RS, Dewan JC, Klug A
Biochemistry 24 4785-801 (1985)
PMID: 3907691

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195823 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
TRNAPHE Chain: A
Molecule details ›
Chain: A
Length: 76 nucleotides
Theoretical weight: 24.89 KDa
Source organism: Saccharomyces cerevisiae
Sequence domains: tRNA

Ligands and Environments

3 bound ligands:
Ligand SPM 1 x SPM
Ligand MG 5 x MG
Ligand PB 3 x PB
11 modified residues:
Ligand 2MG 1 x 2MG
Ligand H2U 2 x H2U
Ligand M2G 1 x M2G
Ligand OMC 1 x OMC
Ligand OMG 1 x OMG
Ligand YG 1 x YG
Ligand PSU 2 x PSU
Ligand 5MC 2 x 5MC
Ligand 7MG 1 x 7MG
Ligand 5MU 1 x 5MU
Ligand 1MA 1 x 1MA

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 56.7Å b: 33.2Å c: 63Å
α: 90° β: 89.9° γ: 90°
R-values:
R R work R free
0.227 0.227 not available

Quick links

Citations

13 review citations

Ribozyme structures and mechanisms.
Doherty et al. (2001)
12 more

6 mentions without citation

A series of PDB related databases for everyday needs.
Joosten et al. (2011)
5 more