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EBI PDBe PDBeView

PDBe Entry: 1s1i view

Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Summary
Header RIBOSOMEsearch
Method ELECTRON MICROSCOPY
Experiment
Released 25/05/2004, deposition: 06/01/2004, last revision: 22/09/2009
Authors Spahn, C.M.search; Gomez-Lorenzo, M.G.search; Grassucci, R.A.search; Jorgensen, R.search; Andersen, G.R.search; Beckmann, R.search; Penczek, P.A.search; Ballesta, J.P.G.search; Frank, J.search
Primary citation Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
EMBO J.search vol:23, pag:1008-1019 (2004) [PubMed ID 14976550 ]search
Keywords 80S ribosomesearch, 60S ribosomal subunitsearch, eEF2search, tRNA translocationsearch, sordarinsearch, cryo-EMsearch
Organism Saccharomyces cerevisiae(baker's yeast) 4932search(3 4 A B C D E F G H I J K L M N O P Q R S T U V 0 W X Y Z 9)
UniProt 60S ribosomal protein L1 (L10a) P53030search (A)
60S ribosomal protein L2 (L5) (YL6) (RP8) P05736search (B)
60S ribosomal protein L3 (YL1) (RP1) (Maintenance of killer protein 8) (Trichodermin resistance protein) P14126search (C)
60S ribosomal protein L4-B (L2) (YL2) (RP2) P49626search (D)
60S ribosomal protein L5 (L1) (L1a) (YL3) (Ribosomal 5S RNA-binding protein) P26321search (E)
60S ribosomal protein L7-A (L6) (YL8) (RP11) P05737search (F)
60S ribosomal protein L8-A (L4) (L4-2) (YL5) (RP6) (L7a-1) (Maintenance of killer protein 7) P17076search (G)
60S ribosomal protein L9-A (L8) (YL11) (RP24) P05738search (H)
60S ribosomal protein L10 (L9) (Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein) P41805search (I)
60S ribosomal protein L11-A (L16) (YL22) (RP39) P0C0W9search (J)
60S ribosomal protein L12 (L15) (YL23) P17079search (K)
60S ribosomal protein L15-A (L13) (YL10) (RP15R) (YP18) P05748search (L)
60S ribosomal protein L16-A (L21) (YL15) (RP22) (L13a) P26784search (M)
60S ribosomal protein L17-A (L20A) (YL17) P05740search (N)
60S ribosomal protein L18 (RP28) P07279search (O)
60S ribosomal protein L19 (L23) (YL14) (RP15L) (RP33) P05735search (P)
60S ribosomal protein L21-A Q02753search (Q)
60S ribosomal protein L23 (L17a) (YL32) P04451search (R)
60S ribosomal protein L24-A (L30) (YL21) (RP29) P04449search (S)
60S ribosomal protein L25 (YL25) (RP16L) (YP42') P04456search (T)
60S ribosomal protein L26-A (L33) (YL33) P05743search (U)
60S ribosomal protein L28 (L29) (YL24) (RP44) (L27a) (RP62) P02406search (V)
60S ribosomal protein L32 P38061search (0)
60S ribosomal protein L31-A (L34) (YL28) P0C2H8search (W)
60S ribosomal protein L35 P39741search (X)
60S ribosomal protein L37-A (L43) (YL35) (YP55) P49166search (Y)
60S ribosomal protein L42 (L41) (YL27) (YP44) (Maintenance of killer protein 18) P02405search (Z)
60S ribosomal protein L43 (L37a) (YL35) P49631search (9)
Related entries 1k5x, 1k5y, 1mms, 1mzp, 1ffk, 1fjf, 1fka, 1gix, 1giy, 1nou, 1s1h, 1s1i
Polymers
Id Name Type UniProt Residues Observed
3 5.8S/25S ribosomal RNA RNA
2999 95%
4 5S RIBOSOMAL RNA RNA
125 97%
A 60S ribosomal protein L1 Protein P53030 (RL1_YEAST)search
 217 98%
B 60S ribosomal protein L2 Protein P05736 (RL2_YEAST)search
 253 96%
C 60S ribosomal protein L3 Protein P14126 (RL3_YEAST)search
 386 93%
D 60S ribosomal protein L4-B Protein P49626 (RL4B_YEAST)search
 361 70%
E 60S ribosomal protein L5 Protein P26321 (RL5_YEAST)search
 222 100%
F 60S ribosomal protein L7-A Protein P05737 (RL7A_YEAST)search
 162 99%
G 60S ribosomal protein L8-A Protein P17076 (RL8A_YEAST)search
 119 100%
H 60S ribosomal protein L9-A Protein P05738 (RL9A_YEAST)search
 191 93%
I 60S ribosomal protein L10 Protein P41805 (RL10_YEAST)search
 168 98%
J 60S ribosomal protein L11 Protein P0C0W9 (RL11A_YEAST)search
 173 95%
K 60S ribosomal protein L12 Protein P17079 (RL12_YEAST)search
 131 100%
L 60S ribosomal protein L15-A Protein P05748 (RL15A_YEAST)search
 203 95%
M 60S ribosomal protein L16-A Protein P26784 (RL16A_YEAST)search
 146 100%
N 60S ribosomal protein L17-A Protein P05740 (RL17A_YEAST)search
 183 80%
O 60S ribosomal protein L18 Protein P07279 (RL18_YEAST)search
 120 100%
P 60S ribosomal protein L19 Protein P05735 (RL19_YEAST)search
 142 99%
Q 60S ribosomal protein L21-A Protein Q02753 (RL21A_YEAST)search
 100 97%
R 60S ribosomal protein L23 Protein P04451 (RL23_YEAST)search
 137 95%
S 60S ribosomal protein L24-A Protein P04449 (RL24A_YEAST)search
 56 94%
T 60S ribosomal protein L25 Protein P04456 (RL25_YEAST)search
 83 92%
U 60S ribosomal protein L26-A Protein P05743 (RL26A_YEAST)search
 126 91%
V 60S ribosomal protein L28 Protein P02406 (RL28_YEAST)search
 148 96%
0 60S ribosomal protein L32 Protein P38061 (RL32_YEAST)search
 130 83%
W 60S ribosomal protein L31 Protein P0C2H8 (RL31A_YEAST)search
 112 69%
X 60S ribosomal protein L35 Protein P39741 (RL35_YEAST)search
 120 49%
Y 60S ribosomal protein L37-A Protein P49166 (RL37A_YEAST)search
 87 59%
Z 60S ribosomal protein L42 Protein P02405 (RL44_YEAST)search
 105 86%
9 60S ribosomal protein L43 Protein P49631 (RL43_YEAST)search
 91 80%
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