1rh9 Summary


Family GH5 endo-beta-mannanase from Lycopersicon esculentum (tomato)

The structure was published by Bourgault, R., Oakley, A.J., Bewley, J.D., and Wilce, M.C., in 2005 in a paper entitled "Three-dimensional structure of (1,4)-beta-D-mannan mannanohydrolase from tomato fruit." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.5 Å and deposited in 2003.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of endo-beta-mannanase. This molecule has the UniProt identifier Q8L5J1 (MAN4_SOLLC)search. The sample contained 373 residues which is 100% of the natural sequence. Out of 373 residues 370 were observed and are deposited in the PDB.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A endo-beta-mannanase Q8L5J1 (27-399) (MAN4_SOLLC)search Solanum lycopersicumsearch 100% 373 99%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q8L5J1 (27 - 399) endo-beta-mannanase Solanum lycopersicum

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A (Q8L5J1) beta-glycanasessearch Glycosidasessearch PF00150: Cellulase (glycosyl hydrolase family 5)search

Chain ID Molecular function (GO) Biological process (GO) Cellular component (GO)
A (Q8L5J1) mannan endo-1,4-beta-mannosidase activitysearch hydrolase activitysearch hydrolase activity, acting on glycosyl bondssearch hydrolase activity, hydrolyzing O-glycosyl compoundssearch metabolic processsearch carbohydrate metabolic processsearch extracellular regionsearch

Chain InterPro annotation
A Glycoside hydrolase, family 5search Glycoside hydrolase, catalytic domainsearch Glycoside hydrolase superfamilysearch