1pdi Summary

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Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate

The structure was published by Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., et al., Arisaka, F., Mesyanzhinov, V.V., and Rossmann, M.G., in 2003 in a paper entitled "Three-dimensional structure of bacteriophage T4 baseplate" (abstract).

The structure was determined using Electron microscopy at a resolution of 12.0 Å and deposited in 2003.

The experimental data on which the structure is based was deposited separately in EMDB as entry 1048.

This PDB entry contains multiple copies of the structure of Short tail fiber protein.

The most likely quaternary structure is a meric assembly.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
B Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
C Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
D Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
E Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
F Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
G Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
H Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
I Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
J Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
K Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
L Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
M Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
N Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
O Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
P Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
Q Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%
R Short tail fiber protein P10930 (250-527) (VG12_BPT4)search Enterobacteria phage T4search < 90% 278 100%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P10930 (250 - 527) Short tail fiber protein Enterobacteria phage T4

Chain Structural classification (SCOP) Sequence family (Pfam)
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R Bacteriophage T4 3D cryo-EM reconstructionsearch Phage Tail Collar Domainsearch, Phage short tail fibre protein gp12, middle domainsearch, Short tail fibre protein receptor-binding domainsearch

Chain ID Molecular function (GO)
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R (P10930) metal ion bindingsearch

Chain InterPro annotation
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R Phage tail collar domainsearch Bacteriophage T4, Gp12search Bacteriophage T4, Gp12 domain 2search Short tail fibre protein, C-terminalsearch