1otz Summary

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Crystal structure of the BAFF-BAFF-R complex (part I)

The structure was published by Kim, H.M., Yu, K.S., Lee, M.E., et al., Yoo, O.J., Lee, H., and Lee, J.-O., in 2003 in a paper entitled "Crystal structure of the BAFF-BAFF-R complex and its implications for receptor activation" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 3.3 Å and deposited in 2003.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of Tumor necrosis factor ligand superfamily member 13B.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The most likely quaternary structure is a 60meric assembly.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
B Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
C Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
D Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
E Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
F Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
G Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
H Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
I Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
J Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
K Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
L Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
M Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
N Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
O Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
P Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
Q Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
R Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
S Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
T Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
U Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
V Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
W Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
X Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
Y Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
Z Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
0 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
1 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
2 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
3 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
4 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
5 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
6 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
7 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
8 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
9 Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
a Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
b Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
c Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
d Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
e Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
f Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
g Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
h Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
i Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
j Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
k Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
l Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
m Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
n Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
o Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
p Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
q Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
r Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
s Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
t Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
u Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
v Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
w Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%
x Tumor necrosis factor ligand superfamily member 13B Q9Y275 (138-285) (TN13B_HUMAN)search Homo sapienssearch < 90% 148 97%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q9Y275 (138 - 285) Tumor necrosis factor ligand superfamily member 13B Homo sapiens

Chain Structural classification (CATH) Sequence family (Pfam)
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x Jelly Rollssearch TNF(Tumour Necrosis Factor) familysearch

Chain ID Molecular function (GO) Biological process (GO) Cellular component (GO)
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x (Q9Y275) tumor necrosis factor receptor bindingsearch immune responsesearch membranesearch

Chain InterPro annotation
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x Tumour necrosis factor domainsearch Tumour necrosis factor-like domainsearch