1nml Summary


Di-haemic Cytochrome c Peroxidase from Pseudomonas nautica 617, form IN (pH 4.0)

The structure was published by Dias, J.M., Alves, T., Pereira, A.S., Bourgeois, D., and Moura, I., in 2004 in a paper entitled "Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.2 Å and deposited in 2003.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of di-haem cytochrome c peroxidase. This molecule has the UniProt identifier P83787 (P83787_MARHY)search. The sample contained 326 residues which is 100% of the natural sequence. Out of 326 residues 315 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule has more than one probable quaternary state observed. For more details see the quaternary structure page.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A di-haem cytochrome c peroxidase P83787 (1-326) (P83787_MARHY)search Marinobacter hydrocarbonoclasticussearch 100% 326 96%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P83787 (1 - 326) di-haem cytochrome c peroxidase Marinobacter hydrocarbonoclasticus

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A (P83787) Di-heme cytochrome c peroxidasesearch Cytochrome csearch PF00034: Cytochrome csearch, PF03150: Di-haem cytochrome c peroxidasesearch

Chain ID Biological process (GO) Molecular function (GO)
A (P83787) oxidation-reduction processsearch heme bindingsearch oxidoreductase activitysearch electron carrier activitysearch iron ion bindingsearch metal ion bindingsearch

Chain InterPro annotation
A search Di-haem cytochrome c peroxidasesearch Cytochrome c-like domainsearch Di-c-type haem protein, MauG/cytochrome c peroxidasesearch