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EBI PDBe PDBeView

PDBe Entry: 1njm view

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin
Summary
Header RIBOSOMEsearch
Method X-RAY DIFFRACTION
Experiment Resolution: 3.6 Å, R-factor: 28.41%, Free R-factor: 30.8%, Spacegroup: I 2 2 2
Released 11/02/2003, deposition: 02/01/2003, last revision: 24/02/2009
Authors Bashan, A.search; Agmon, I.search; Zarivatch, R.search; Schluenzen, F.search; Harms, J.M.search; Berisio, R.search; Bartels, H.search; Hansen, H.A.search; Yonath, A.search
Primary citation Structural basis of the ribosomal machinery for Peptide bond formation, translocation, and nascent chain progression
MOL.CELLsearch vol:11, pag:91-102 (2003) [PubMed ID 12535524 ]search
Keywords Ribosomessearch, tRNAsearch, puromycinsearch, sparsomycinsearch, peptidyl-transferasesearch, peptide bond formationsearch
Organism Deinococcus radiodurans 1299search(0 K T)
UniProt 50S ribosomal protein L16 Q9RXJ5search (K)
50S ribosomal protein L25 (General stress protein CTC) Q9RX88search (T)
Related entries 1njn, 1njo, 1njp, 1k01, 1jzx, 1jzy, 1jzz, 1k00, 1nkw
Polymers
Id Name Type UniProt Residues Observed
0 23S ribosomal RNA RNA
2880 96%
5 tRNA acceptor stem mimic RNA
35 71%
K 50S ribosomal protein L16 Protein Q9RXJ5 (RL16_DEIRA)search
 141 87%
T GENERAL STRESS PROTEIN CTC Protein Q9RX88 (RL25_DEIRA)search
 237 94%
Heterogens
Id Name Ligands
0 SPARSOMYCIN SPS search
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