1ncp Summary

pdbe.org/1ncp
spacer

STRUCTURAL CHARACTERIZATION OF A 39 RESIDUE SYNTHETIC PEPTIDE CONTAINING THE TWO ZINC BINDING DOMAINS FROM THE HIV-1 P7 NUCLEOCAPSID PROTEIN BY CD AND NMR SPECTROSCOPY

The structure was published by Omichinski, J.G., Clore, G.M., Sakaguchi, K., Appella, E., and Gronenborn, A.M., in 1991 in a paper entitled "Structural characterization of a 39-residue synthetic peptide containing the two zinc binding domains from the HIV-1 p7 nucleocapsid protein by CD and NMR spectroscopy." (abstract).

The structure was determined using NMR spectroscopy and deposited in 1991.

The experimental data on which the structure is based was not deposited.

This PDB entry contains a complex of 2 biomacromolecules, namely HIV-1 P7 NUCLEOCAPSID PROTEIN.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms heterodimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
N HIV-1 P7 NUCLEOCAPSID PROTEIN P04585 (390-406) (POL_HV1H2)search HIV-1 M:B_HXB2Rsearch < 90% 17 100%
C HIV-1 P7 NUCLEOCAPSID PROTEIN P24740 (405-422) (POL_HV1U4)search Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)search < 90% 18 100%


This entry contains 2 unique UniProt proteins:

UniProt accession Name Organism PDB
P04585 (390 - 406) HIV-1 P7 NUCLEOCAPSID PROTEIN Human immunodeficiency virus 1
P24740 (405 - 422) HIV-1 P7 NUCLEOCAPSID PROTEIN Human immunodeficiency virus 1

Chain Structural classification (SCOP) Sequence family (Pfam)
N Retrovirus zinc finger-like domainssearch Zinc knucklesearch
C Retrovirus zinc finger-like domainssearch Zinc knucklesearch

Chain ID Molecular function (GO)
N (P04585) zinc ion bindingsearch nucleic acid bindingsearch
C (P24740) nucleic acid bindingsearch zinc ion bindingsearch

Chain InterPro annotation
N Zinc finger, CCHC-typesearch
C Zinc finger, CCHC-typesearch