Function and Biology Details
Reactions catalysed:
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
3'-end directed exonucleolytic cleavage of viral RNA-DNA hybrid
Endohydrolysis of RNA in RNA/DNA hybrids. Three different cleavage modes: 1. sequence-specific internal cleavage of RNA. Human immunodeficiency virus type 1 and Moloney murine leukemia virus enzymes prefer to cleave the RNA strand one nucleotide away from the RNA-DNA junction. 2. RNA 5'-end directed cleavage 13-19 nucleotides from the RNA end. 3. DNA 3'-end directed cleavage 15-20 nucleotides away from the primer terminus.
Specific for a P1 residue that is hydrophobic, and P1' variable, but often Pro.
Biochemical function:
Biological process:
- not assigned
Cellular component:
- not assigned
Sequence domains:
Structure domain:
Structure analysis Details
Assembly composition:
hetero dimer (preferred)
Assembly name:
Integrase and Protease (preferred)
PDBe Complex ID:
PDB-CPX-138009 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nucleocapsid protein p7
Molecule details ›
Chain: N
Length: 17 amino acids
Theoretical weight: 1.93 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
Sequence domains: Zinc knuckle
Length: 17 amino acids
Theoretical weight: 1.93 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
- Canonical:
P04585 (Residues: 390-406; Coverage: 1%)
Sequence domains: Zinc knuckle
Nucleocapsid protein p7
Molecule details ›
Chain: C
Length: 18 amino acids
Theoretical weight: 2.07 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
Sequence domains: Zinc knuckle
Length: 18 amino acids
Theoretical weight: 2.07 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
- Canonical: P24740 (Residues: 405-422; Coverage: 1%)
Sequence domains: Zinc knuckle
