› 1ljx

X-ray diffraction
1.64Å resolution

THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE

Released:
DOI: 10.2210/pdb1ljx/pdb
PDB entry 1ljx coloured by chain, front view.
PDB entry 1ljx coloured by chain, side view.
PDB entry 1ljx coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of d(TGCGCA)2 at 293 K: comparison of the effects of sequence and temperature.
Thiyagarajan S, Satheesh Kumar P, Rajan SS, Gautham N
Acta Crystallogr D Biol Crystallogr 58 1381-4 (2002)
PMID: 12136163

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114139 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*TP*GP*CP*GP*CP*A)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 2 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P212121
Unit cell:
a: 21.182Å b: 28.363Å c: 44.44Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.212 0.267
Expression system: Not provided

Quick links

Citations

1 citations in other articles

Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.
Hart et al. (2012)

4 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
3 more