› 1jd1

X-ray diffraction
1.7Å resolution

Crystal Structure of YEO7_yeast

Released:
DOI: 10.2210/pdb1jd1/pdb
PDB entry 1jd1 coloured by chain, front view.
PDB entry 1jd1 coloured by chain, side view.
PDB entry 1jd1 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1).
Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK
Proteins 48 431-6 (2002)
PMID: 12112709

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-154008 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein HMF1 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 129 amino acids
Theoretical weight: 13.92 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P40037 (Residues: 1-129; Coverage: 100%)
Gene names: HIG1, HMF1, YER057C
Sequence domains: Endoribonuclease L-PSP
Structure domains: RutC-like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X9B
Spacegroup: P21
Unit cell:
a: 78.18Å b: 64.1Å c: 80.85Å
α: 90° β: 90.63° γ: 90°
R-values:
R R work R free
0.207 0.207 0.238
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

3 review citations

Understanding microbial metabolism.
Downs DM. (2006)
2 more

10 mentions without citation

The interface of protein structure, protein biophysics, and molecular evolution.
Liberles et al. (2012)
9 more