› 1it1

Solution NMR

Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Released:
DOI: 10.2210/pdb1it1/pdb
PDB entry 1it1 coloured by chain, ensemble of 20 models, front view.
PDB entry 1it1 coloured by chain, ensemble of 20 models, side view.
PDB entry 1it1 coloured by chain, ensemble of 20 models, top view.
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Primary publication:
Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.
Harada E, Fukuoka Y, Ohmura T, Fukunishi A, Kawai G, Fujiwara T, Akutsu H
J Mol Biol 319 767-78 (2002)
PMID: 12054869

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132281 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c3 Chain: A
Molecule details ›
Chain: A
Length: 107 amino acids
Theoretical weight: 11.56 KDa
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
UniProt:
  • Canonical: P00132 (Residues: 24-130; Coverage: 100%)
Gene name: DvMF_2499
Sequence domains: Class III cytochrome C family
Structure domains: Cytochrome C3

Ligands and Environments

1 bound ligand:
Ligand HEC 4 x HEC
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing

Quick links

Citations

3 review citations

Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.
Liu et al. (2014)
2 more

3 mentions without citation

On side-chain conformational entropy of proteins.
Zhang et al. (2006)
2 more