1hdb Summary

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ANALYSIS OF THE CRYSTAL STRUCTURE, MOLECULAR MODELING AND INFRARED SPECTROSCOPY OF THE DISTAL BETA-HEME POCKET VALINE67(E11)-THREONINE MUTATION OF HEMOGLOBIN

The structure was published by Pechik, I., Ji, X., Fidelis, K., et al., Brinigar, W.S., Fronticelli, C., and Gilliland, G.L., in 1996 in a paper entitled "Crystallographic, molecular modeling, and biophysical characterization of the valine beta 67 (E11)-->threonine variant of hemoglobin." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.2 Å and deposited in 1995.

The experimental data on which the structure is based was not deposited.

This PDB entry contains a complex of 2 biomacromolecules, namely HEMOGLOBIN (DEOXY) BETA-V67T.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms heterotetramers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A HEMOGLOBIN (DEOXY) BETA-V67T P69905 (2-142) (HBA_HUMAN)search Homo sapienssearch 98% 141 100%
C HEMOGLOBIN (DEOXY) BETA-V67T P69905 (2-142) (HBA_HUMAN)search Homo sapienssearch 98% 141 100%
B HEMOGLOBIN (DEOXY) BETA-V67T P68871 (2-147) (HBB_HUMAN)search Homo sapienssearch 98% 146 100%
D HEMOGLOBIN (DEOXY) BETA-V67T P68871 (2-147) (HBB_HUMAN)search Homo sapienssearch 98% 146 100%


This entry contains 2 unique UniProt proteins:

UniProt accession Name Organism PDB
P69905 (2 - 142) HEMOGLOBIN (DEOXY) BETA-V67T Homo sapiens
P68871 (2 - 147) HEMOGLOBIN (DEOXY) BETA-V67T Homo sapiens

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, C (P69905) Globinssearch Globinssearch PF00042: Globinsearch
B, D (P68871) Globinssearch Globinssearch PF00042: Globinsearch

Chain ID Cellular component (GO) Biological process (GO) Molecular function (GO)
A, C (P69905) extracellular regionsearch membranesearch hemoglobin complexsearch endocytic vesicle lumensearch cytosolic small ribosomal subunitsearch haptoglobin-hemoglobin complexsearch cytosolsearch extracellular vesicular exosomesearch blood microparticlesearch hydrogen peroxide catabolic processsearch oxygen transportsearch response to hydrogen peroxidesearch positive regulation of cell deathsearch bicarbonate transportsearch transportsearch protein heterooligomerizationsearch oxidation-reduction processsearch small molecule metabolic processsearch protein bindingsearch peroxidase activitysearch oxygen bindingsearch haptoglobin bindingsearch metal ion bindingsearch oxygen transporter activitysearch heme bindingsearch iron ion bindingsearch
B, D (P68871) hemoglobin complexsearch extracellular regionsearch extracellular vesicular exosomesearch endocytic vesicle lumensearch blood microparticlesearch cytosolsearch haptoglobin-hemoglobin complexsearch oxygen transportsearch renal absorptionsearch transportsearch bicarbonate transportsearch response to hydrogen peroxidesearch regulation of blood vessel sizesearch protein heterooligomerizationsearch positive regulation of nitric oxide biosynthetic processsearch oxidation-reduction processsearch nitric oxide transportsearch positive regulation of cell deathsearch platelet aggregationsearch blood coagulationsearch small molecule metabolic processsearch hydrogen peroxide catabolic processsearch regulation of blood pressuresearch protein bindingsearch oxygen transporter activitysearch iron ion bindingsearch hemoglobin bindingsearch peroxidase activitysearch oxygen bindingsearch haptoglobin bindingsearch metal ion bindingsearch heme bindingsearch

Chain InterPro annotation
A, C Globinsearch Haemoglobin, alphasearch Haemoglobin, pisearch Globin-likesearch Globin, structural domainsearch
B, D Globinsearch Haemoglobin, betasearch Globin-likesearch Globin, structural domainsearch