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PDB entry 1gzm

STRUCTURE OF BOVINE RHODOPSIN IN A TRIGONAL CRYSTAL FORM

The structure was published by Li, J., Edwards, P., Burghammer, M., Villa, C., and Schertler, G.F.X., in 2004 in a paper entitled "Structure of Bovine Rhodopsin in a Trigonal Crystal Form" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.65 Å and deposited in 2002.

A re-refinement of this structure, using the same experimental data but carried out by different authors, is available as entry 3c9l.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of RHODOPSIN.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms homodimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A RHODOPSIN P02699 (1-348) (OPSD_BOVIN)search Bos taurussearch 99% 349 94%
B RHODOPSIN P02699 (1-348) (OPSD_BOVIN)search Bos taurussearch 99% 349 94%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P02699 (1 - 348) RHODOPSIN Bos taurus

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, B (P02699) Rhodopsin-likesearch Rhopdopsin 7-helix transmembrane proteinssearch Amino terminal of the G-protein receptor rhodopsinsearch, 7 transmembrane receptor (rhodopsin family)search

Chain ID Cellular component (GO) Molecular function (GO) Biological process (GO)
A, B (P02699) Photoreceptor outer segmentsearch, Photoreceptor inner segmentsearch, Golgi apparatussearch, Plasma membranesearch, Membranesearch, Integral to membranesearch, Photoreceptor outer segment membranesearch, Photoreceptor inner segment membranesearch Signal transducer activitysearch, Receptor activitysearch, G-protein coupled receptor activitysearch, Protein bindingsearch, Photoreceptor activitysearch, Metal ion bindingsearch Protein phosphorylationsearch, Signal transductionsearch, G-protein coupled receptor signaling pathwaysearch, Visual perceptionsearch, Phototransductionsearch, Response to light stimulussearch, Detection of light stimulussearch, Protein-chromophore linkagesearch, Response to stimulussearch, Sensory perception of light stimulussearch, Retina development in camera-type eyesearch, Cellular response to light stimulussearch

Chain InterPro annotation
A, B GPCR, rhodopsin-like, 7TMsearch, Rhodopsinsearch, Opsinsearch, GPCR, rhodopsin-like superfamilysearch, Rhodopsin, N-terminalsearch