› 1e5d

X-ray diffraction
2.5Å resolution

RUBREDOXIN OXYGEN:OXIDOREDUCTASE (ROO) FROM ANAEROBE DESULFOVIBRIO GIGAS

Released:
DOI: 10.2210/pdb1e5d/pdb
PDB entry 1e5d coloured by chain, front view.
PDB entry 1e5d coloured by chain, side view.
PDB entry 1e5d coloured by chain, top view.
Source organism: Megalodesulfovibrio gigas
Primary publication:
Structure of a dioxygen reduction enzyme from Desulfovibrio gigas.
Frazão C, Silva G, Gomes CM, Matias P, Coelho R, Sieker L, Macedo S, Liu MY, Oliveira S, Teixeira M, Xavier AV, Rodrigues-Pousada C, Carrondo MA, Le Gall J
Nat Struct Biol 7 1041-5 (2000)
PMID: 11062560

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190231 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Rubredoxin-oxygen oxidoreductase Chains: A, B
Molecule details ›
Chains: A, B
Length: 402 amino acids
Theoretical weight: 44.85 KDa
Source organism: Megalodesulfovibrio gigas
UniProt:
  • Canonical: Q9F0J6 (Residues: 1-402; Coverage: 100%)
Gene name: roo
Sequence domains:
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand FMN 2 x FMN
Ligand FEO 2 x FEO
Ligand OXY 2 x OXY
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: P21212
Unit cell:
a: 98.24Å b: 101.25Å c: 90.8Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.179 not available 0.248

Quick links

Citations

16 review citations

Metallo-beta-lactamases (classification, activity, genetic organization, structure, zinc coordination) and their superfamily.
Bebrone C. (2007)
15 more

14 mentions without citation

Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis.
Liu et al. (2005)
13 more