1d7r Summary

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CRYSTAL STRUCTURE OF THE COMPLEX OF 2,2-DIALKYLGLYCINE DECARBOXYLASE WITH 5PA

The structure was published by Malashkevich, V.N., Strop, P., Keller, J.W., Jansonius, J.N., and Toney, M.D., in 1999 in a paper entitled "Crystal structures of dialkylglycine decarboxylase inhibitor complexes." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.0 Å and deposited in 1999.

The experimental data on which the structure is based was not deposited.

The PDB entry contains the structure of PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)). This molecule has the UniProt identifier P16932 (DGDA_BURCE)search. The sample contained 433 residues which is 100% of the natural sequence. Out of 433 residues 431 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms homotetramers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)) P16932 (1-433) (DGDA_BURCE)search Burkholderia cepaciasearch 100% 433 99%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P16932 (1 - 433) PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)) Burkholderia cepacia

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A (P16932) GABA-aminotransferase-likesearch Aspartate Aminotransferase, domain 1search, Type I PLP-dependent aspartate aminotransferase-like (Major domain)search PF00202: Aminotransferase class-IIIsearch

Chain ID Biological process (GO) Molecular function (GO)
A (P16932) metabolic processsearch catalytic activitysearch pyridoxal phosphate bindingsearch lyase activitysearch transaminase activitysearch 2,2-dialkylglycine decarboxylase (pyruvate) activitysearch carboxy-lyase activitysearch

Chain InterPro annotation
A Aminotransferase class-IIIsearch Pyridoxal phosphate-dependent transferase, major region, subdomain 1search Pyridoxal phosphate-dependent transferase, major region, subdomain 2search Pyridoxal phosphate-dependent transferasesearch