1bsj Summary



The structure was published by Hao, B., Gong, W., Rajagopalan, P.T., Zhou, Y., Pei, D., and Chan, M.K., in 1999 in a paper entitled "Structural basis for the design of antibiotics targeting peptide deformylase." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 3.0 Å and deposited in 1998.

The experimental data on which the structure is based was not deposited.

The PDB entry contains the structure of PROTEIN (PEPTIDE DEFORMYLASE). This molecule has the UniProt identifier P0A6K3 (DEF_ECOLI)search. The sample contained 168 residues which is 99% of the natural sequence. Out of 168 residues 166 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A PROTEIN (PEPTIDE DEFORMYLASE) P0A6K3 (2-169) (DEF_ECOLI)search Escherichia coli K-12search 97% 168 98%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P0A6K3 (2 - 169) PROTEIN (PEPTIDE DEFORMYLASE) Escherichia coli

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A (P0A6K3) Peptide deformylasesearch Peptide Deformylasesearch PF01327: Polypeptide deformylasesearch

Chain ID Molecular function (GO) Biological process (GO)
A (P0A6K3) peptide deformylase activitysearch protein bindingsearch iron ion bindingsearch ribosome bindingsearch zinc ion bindingsearch ferrous iron bindingsearch hydrolase activitysearch metal ion bindingsearch N-terminal protein amino acid modificationsearch translationsearch co-translational protein modificationsearch

Chain InterPro annotation
A Formylmethionine deformylasesearch Peptide deformylasesearch