PDB 1bd0 biological assemblies and structure analysis ‹ Protein Data Bank in Europe (PDBe)

Assemblies

Assembly 1 (preferred)

Download 3D Visualisation

Assembly Name: Alanine racemase
hide full assembly name

Multimeric state: homo dimer

Accessible surface area: 26460.36 Å²

Buried surface area: 7723.92 Å²

Dissociation area: 3,634.79 Å²

Dissociation energy (ΔG^diss): 12.97 kcal/mol

Dissociation entropy (TΔS^diss): 15.01 kcal/mol

Symmetry number: 2

PDBe Complex ID: PDB-CPX-145434

$Homo dimeric assembly 1 of PDB entry 1bd0 coloured by chemically distinct molecules, front view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>2 copies of Alanine racemase;</li> <li class='image_legend_li'>2 copies of {1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID;</li> <li class='image_legend_li'>1 copy of water.</li></ul>}$

$Homo dimeric assembly 1 of PDB entry 1bd0 coloured by chemically distinct molecules, side view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>2 copies of Alanine racemase;</li> <li class='image_legend_li'>2 copies of {1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID;</li> <li class='image_legend_li'>1 copy of water.</li></ul>}$

$Homo dimeric assembly 1 of PDB entry 1bd0 coloured by chemically distinct molecules, top view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>2 copies of Alanine racemase;</li> <li class='image_legend_li'>2 copies of {1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID;</li> <li class='image_legend_li'>1 copy of water.</li></ul>}$

Macromolecules

Alanine racemase

Chains: A, B
Length: 388 amino acids
Theoretical weight: 43.57 KDa
Source organism: Geobacillus stearothermophilus
UniProt:

Canonical: P10724 (Residues: 1-388; Coverage: 100%)

Gene names: alr, dal
Pfam:

Alanine racemase, N-terminal domain
Alanine racemase, C-terminal domain

InterPro:

Alanine racemase
Alanine racemase, N-terminal
PLP-binding barrel
Alanine racemase, pyridoxal-phosphate attachment site
Alanine racemase/group IV decarboxylase, C-terminal
Alanine racemase, C-terminal

CATH:

Lyase, Ornithine Decarboxylase; Chain A, domain 1
Alanine racemase

SCOP:

Alanine racemase
Alanine racemase-like, N-terminal domain

Alanine racemase in PDB entry 1bd0, assembly 1, front view.

Alanine racemase in PDB entry 1bd0, assembly 1, side view.

Alanine racemase in PDB entry 1bd0, assembly 1, top view.

FASTA Sequence


    >pdb|1bd0|A B

MNDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAIGAGESSA

PDBe-KB: UniProt Coverage View: P10724

Molecule details ›

Download

FASTA (Protein chains A, B)
Archive mmCIF file
Updated mmCIF file
PDB file
PDB header
PDB file (gz)
PDBML
PDBML (ATOM lines)
PDBML (no atoms)
SIFTS XML file with residue-level mappings

Search similar proteins

Similar 3D structures (PDBeFold)
Similar sequences

BLAST P10724 (UniProt)

Protein Data Bank in Europe

ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE

Quick links

Assemblies

Assembly 1 (preferred)

Macromolecules

Search similar proteins

Quick links

PDBe › 1bd0 › Structure analysis

ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE

Quick links

Assemblies

Assembly 1 (preferred)

Macromolecules

Search similar proteins

Quick links

1bd0 › Structure analysis