› 1pf5

X-ray diffraction
2.5Å resolution

Structural Genomics, Protein YJGH

Released:
DOI: 10.2210/pdb1pf5/pdb
PDB entry 1pf5 coloured by chain, front view.
PDB entry 1pf5 coloured by chain, side view.
PDB entry 1pf5 coloured by chain, top view.
Source organism: Escherichia coli
Entry authors: Zhang R, Joachimiak A, Edwards A, Savchenko A, Xu L, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153867 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
RutC family protein YjgH Chain: A
Molecule details ›
Chain: A
Length: 131 amino acids
Theoretical weight: 14.6 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P39332 (Residues: 1-131; Coverage: 100%)
Gene names: JW4206, b4248, yjgH
Sequence domains: Endoribonuclease L-PSP
Structure domains: RutC-like

Ligands and Environments

1 bound ligand:
Ligand HG 1 x HG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I213
Unit cell:
a: 127.737Å b: 127.737Å c: 127.737Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.196 0.218
Expression system: Escherichia coli

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