› 1npk

X-ray diffraction
1.8Å resolution

REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION

Released:
DOI: 10.2210/pdb1npk/pdb
PDB entry 1npk coloured by chain, front view.
PDB entry 1npk coloured by chain, side view.
PDB entry 1npk coloured by chain, top view.
Source organism: Dictyostelium discoideum
Primary publication:
Refined X-ray structure of Dictyostelium discoideum nucleoside diphosphate kinase at 1.8 A resolution.
Moréra S, LeBras G, Lascu I, Lacombe ML, Véron M, Janin J
J Mol Biol 243 873-90 (1994)
PMID: 7966307

Function and Biology Details

Reaction catalysed: 
ATP + nucleoside diphosphate = ADP + nucleoside triphosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-149819 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside diphosphate kinase, cytosolic Chain: A
Molecule details ›
Chain: A
Length: 154 amino acids
Theoretical weight: 16.69 KDa
Source organism: Dictyostelium discoideum
Expression system: Not provided
UniProt:
  • Canonical: P22887 (Residues: 2-155; Coverage: 99%)
Gene names: DDB_G0273069, DDB_G0273805, gip17, ndkB, ndkC-1, ndkC-2
Sequence domains: Nucleoside diphosphate kinase
Structure domains: Nucleoside diphosphate kinase-like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P6322
Unit cell:
a: 74.2Å b: 74.2Å c: 105.14Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.196 not available
Expression system: Not provided

Quick links

Citations

7 review citations

The initiation of simian virus 40 DNA replication in vitro.
Bullock PA. (1997)
6 more

10 mentions without citation

A graph-theory algorithm for rapid protein side-chain prediction.
Canutescu et al. (2003)
9 more