Chemical Components in the PDB

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  • GIV (Stereoisomer)
  • GAL (Stereoisomer)
  • Z0F (Stereoisomer)
  • Z2D (Stereoisomer)
  • GL0 (Stereoisomer)
  • Z8H (Stereoisomer)
  • 4N2 (Stereoisomer)
  • BGC (Stereoisomer)
  • Z8T (Stereoisomer)
  • SHD (Stereoisomer)
  • 4GL (Stereoisomer)
  • GUP (Stereoisomer)
  • WOO (Stereoisomer)
  • ALL (Stereoisomer)
  • ZCD (Stereoisomer)
  • GLC (Stereoisomer)
  • BMA (Stereoisomer)
  • GXL (Stereoisomer)
  • Z6H (Stereoisomer)
  • ZEE (Stereoisomer)
  • MAN (Stereoisomer)
  • AFD (Stereoisomer)
  • SDY (Stereoisomer)
  • 3MK (Stereoisomer)
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GLA : Summary

Code

GLA

One-letter code

X

Molecule name

alpha-D-galactopyranose

Synonyms

alpha-D-galactose
D-galactose
galactose
ALPHA D-GALACTOSE

Systematic names

ProgramVersionName
ACDLabs 10.04 alpha-D-galactopyranose
OpenEye OEToolkits 1.5.0 (2S,3R,4S,5R,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol

Formula

C6 H12 O6

Formal charge

0

Molecular weight

180.156 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 OC1C(O)C(OC(O)C1O)CO
SMILES CACTVS 3.341 OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
SMILES OpenEye OEToolkits 1.5.0 C(C1C(C(C(C(O1)O)O)O)O)O
Canonical SMILES CACTVS 3.341 OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@H]1O
Canonical SMILES OpenEye OEToolkits 1.5.0 C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O

IUPAC InChI

InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6+/m1/s1

IUPAC InChI key

WQZGKKKJIJFFOK-PHYPRBDBSA-N

Is part of

RAF , MLB , LMO , STW
GLA

wwPDB Information

Atom count

24 (12 without Hydrogen)

Polymer type

Saccharide

Type description

D-saccharide, alpha linking

Type code

ATOMS

Is modified

No

Standard parent

Not Assigned

Defined at

1999-07-08

Last modified at

2020-07-17

Status

Released

Obsoleted

Not Assigned



GLA : Atoms of Molecule

Total Number of Atoms: 24
Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.424 -0.489 -0.382
2 C2 C C2 R N N 0 0.392 -0.498 -1.512
3 C3 C C3 S N N 0 -0.65 0.592 -1.244
4 C4 C C4 R N N 0 -1.222 0.387 0.163
5 C5 C C5 R N N 0 -0.068 0.33 1.166
6 C6 C C6 N N N 0 -0.63 0.161 2.579
7 O1 O O1 N N Y 0 2.043 0.797 -0.316
8 O2 O O2 N N N 0 1.044 -0.242 -2.757
9 O3 O O3 N N N 0 -1.7 0.498 -2.209
10 O4 O O4 N N N 0 -1.958 -0.836 0.206
11 O5 O O5 N N N 0 0.783 -0.771 0.859
12 O6 O O6 N N N 0 0.446 0.112 3.517
13 H1 H H1 N N N 0 2.183 -1.246 -0.578
14 H2 H H2 N N N 0 -0.097 -1.47 -1.55
15 H3 H H3 N N N 0 -0.18 1.573 -1.309
16 H4 H H4 N N N 0 -1.881 1.218 0.414
17 H5 H H5 N N N 0 0.504 1.256 1.112
18 H61 H H61 N N N 0 -1.202 -0.764 2.634
19 H62 H H62 N N N 0 -1.279 1.004 2.815
20 HO1 H HO1 N N Y 0 2.688 0.76 0.403
21 HO2 H HO2 N N Y 0 1.695 -0.947 -2.882
22 HO3 H HO3 N N Y 0 -1.293 0.62 -3.078
23 HO4 H HO4 N N Y 0 -2.669 -0.758 -0.443
24 HO6 H HO6 N N Y 0 0.05 0.005 4.393



GLA : Chemical Bonds

Total Number of Bonds: 24
Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C1 O1 C O sing 1.43 N N
3 C1 O5 C O sing 1.42 N N
4 C1 H1 C H sing 1.09 N N
5 C2 C3 C C sing 1.53 N N
6 C2 O2 C O sing 1.43 N N
7 C2 H2 C H sing 1.09 N N
8 C3 C4 C C sing 1.53 N N
9 C3 O3 C O sing 1.43 N N
10 C3 H3 C H sing 1.09 N N
11 C4 C5 C C sing 1.53 N N
12 C4 O4 C O sing 1.43 N N
13 C4 H4 C H sing 1.09 N N
14 C5 C6 C C sing 1.53 N N
15 C5 O5 C O sing 1.43 N N
16 C5 H5 C H sing 1.09 N N
17 C6 O6 C O sing 1.43 N N
18 C6 H61 C H sing 1.09 N N
19 C6 H62 C H sing 1.09 N N
20 O1 HO1 O H sing 0.97 N N
21 O2 HO2 O H sing 0.97 N N
22 O3 HO3 O H sing 0.97 N N
23 O4 HO4 O H sing 0.97 N N
24 O6 HO6 O H sing 0.97 N N



GLA : Used in PDB Entries

Total Number of PDB Entries: 285
Ligand Code PDB Entry ID Type Total Distinct
GLA 1axz Open in New Window Bound ligand 1 1
GLA 1ay2 Open in New Window s 1 1
GLA 1bos Open in New Window s 49 2
GLA 1c4q Open in New Window s 5 1
GLA 1cqf Open in New Window s 6 1
GLA 1d1i Open in New Window s 6 2
GLA 1d1k Open in New Window s 5 1
GLA 1djr Open in New Window Bound ligand 5 1
GLA 1e4k Open in New Window s 1 1
GLA 1eef Open in New Window Bound ligand 10 1
GLA 1f31 Open in New Window s 1 1
GLA 1fcp Open in New Window s 2 2
GLA 1fi1 Open in New Window s 1 1
GLA 1h3y Open in New Window s 2 2
GLA 1hiz Open in New Window Bound ligand 1 1
GLA 1hql Open in New Window s 2 1
GLA 1j8r Open in New Window s 1 1
GLA 1kbg Open in New Window s 1 1
GLA 1l7k Open in New Window Bound ligand 2 1
GLA 1mfa Open in New Window s 1 1
GLA 1mfb Open in New Window s 2 2
GLA 1mfc Open in New Window s 1 1
GLA 1mfd Open in New Window s 1 1
GLA 1mfe Open in New Window s 1 1
GLA 1ns0 Open in New Window Bound ligand 2 1
GLA 1ns8 Open in New Window Bound ligand 2 1
GLA 1nsm Open in New Window Bound ligand 1 1
GLA 1nsu Open in New Window Bound ligand 2 1
GLA 1ofl Open in New Window s 1 1
GLA 1ofm Open in New Window s 1 1
GLA 1oh4 Open in New Window s 2 2
GLA 1oko Open in New Window Bound ligand 3 1
GLA 1pie Open in New Window Bound ligand 1 1
GLA 1qff Open in New Window s 1 1
GLA 1qfg Open in New Window s 1 1
GLA 1qjq Open in New Window s 1 1
GLA 1qkc Open in New Window s 1 1
GLA 1s4e Open in New Window Bound ligand 9 1
GLA 1tyu Open in New Window s 2 2
GLA 1tyw Open in New Window s 2 2
GLA 1tyx Open in New Window s 2 2
GLA 1uas Open in New Window Bound ligand 1 1
GLA 1ugy Open in New Window s 4 2
GLA 1ule Open in New Window s 2 1
GLA 1urx Open in New Window s 1 1
GLA 1w2t Open in New Window s 6 1
GLA 1wuu Open in New Window Bound ligand 4 1
GLA 1ww4 Open in New Window s 1 1
GLA 1yyn Open in New Window s 1 1
GLA 2aj4 Open in New Window Bound ligand 2 1
GLA 2bos Open in New Window s 7 2
GLA 2c5c Open in New Window Bound ligand 1 1
GLA 2dei Open in New Window Bound ligand 1 1
GLA 2dej Open in New Window Bound ligand 1 1
GLA 2du0 Open in New Window Bound ligand 4 1
GLA 2dvg Open in New Window Bound ligand 3 1
GLA 2e51 Open in New Window s 4 1
GLA 2e53 Open in New Window s 8 2
GLA 2e7q Open in New Window s 3 1
GLA 2fcp Open in New Window s 2 2
GLA 2g7c Open in New Window s 4 1
GLA 2hi2 Open in New Window s 1 1
GLA 2hil Open in New Window s 18 1
GLA 2i58 Open in New Window s 2 1
GLA 2j3u Open in New Window Bound ligand 4 1
GLA 2obt Open in New Window s 1 1
GLA 2p1s Open in New Window s 1 1
GLA 2pil Open in New Window s 1 1
GLA 2vx6 Open in New Window s 1 1
GLA 2vxj Open in New Window s 24 3
GLA 2wmj Open in New Window s 2 1
GLA 2wyf Open in New Window s 6 1
GLA 2x6w Open in New Window s 1 1
GLA 2x6x Open in New Window s 1 1
GLA 2x6y Open in New Window s 1 1
GLA 2x85 Open in New Window s 1 1
GLA 2xn2 Open in New Window Bound ligand 1 1
GLA 2yb7 Open in New Window s 2 1
GLA 2yfo Open in New Window Bound ligand 1 1
GLA 2yg0 Open in New Window s 1 1
GLA 2ygm Open in New Window s 2 1
GLA 2zmk Open in New Window s 4 1
GLA 2zml Open in New Window s 8 2
GLA 2zmn Open in New Window s 4 1
GLA 2zx3 Open in New Window s 4 1
GLA 2zx4 Open in New Window s 4 2
GLA 3agv Open in New Window s 1 1
GLA 3alt Open in New Window s 4 1
GLA 3alu Open in New Window s 4 1
GLA 3byn Open in New Window s 1 1
GLA 3ca1 Open in New Window Bound ligand 2 1
GLA 3dni Open in New Window s 1 1
GLA 3ef2 Open in New Window s 16 3
GLA 3gxp Open in New Window Bound ligand 2 1
GLA 3h55 Open in New Window Bound ligand 4 1
GLA 3hg3 Open in New Window s 2 1
GLA 3hg5 Open in New Window Bound ligand 2 1
GLA 3hkt Open in New Window s 1 1
GLA 3hn1 Open in New Window Bound ligand 1 1
GLA 3ilf Open in New Window s 1 1
GLA 3lih Open in New Window s 1 1
GLA 3lrl Open in New Window s 1 1
GLA 3lrm Open in New Window s 4 1
GLA 3lxa Open in New Window Bound ligand 4 1
GLA 3n36 Open in New Window Bound ligand 1 1
GLA 3p5g Open in New Window s 3 3
GLA 3q38 Open in New Window s 1 1
GLA 3r4z Open in New Window Bound ligand 2 1
GLA 3r6k Open in New Window s 1 1
GLA 3s5z Open in New Window Bound ligand 2 1
GLA 3th0 Open in New Window s 2 2
GLA 3tty Open in New Window Bound ligand 6 1
GLA 3v0w Open in New Window s 1 1
GLA 3v2u Open in New Window Bound ligand 2 1
GLA 3w7u Open in New Window Bound ligand 2 1
GLA 3w7w Open in New Window s 2 1
GLA 3w7x Open in New Window s 2 1
GLA 3wmp Open in New Window Bound ligand 1 1
GLA 3znk Open in New Window s 3 1
GLA 3znl Open in New Window s 3 1
GLA 3znm Open in New Window s 3 1
GLA 3zw1 Open in New Window Bound ligand 1 1
GLA 3zw2 Open in New Window s 1 1
GLA 3zwe Open in New Window s 2 1
GLA 4al9 Open in New Window s 2 1
GLA 4aw7 Open in New Window s 1 1
GLA 4b4r Open in New Window s 2 1
GLA 4cov Open in New Window s 1 1
GLA 4d6d Open in New Window s 1 1
GLA 4d6g Open in New Window s 1 1
GLA 4drv Open in New Window s 1 1
GLA 4fnt Open in New Window s 3 1
GLA 4fnu Open in New Window s 8 2
GLA 4i4u Open in New Window Bound ligand 8 1
GLA 4ma1 Open in New Window s 1 1
GLA 4ndv Open in New Window s 1 1
GLA 4op7 Open in New Window s 4 2
GLA 4r6o Open in New Window Bound ligand 4 1
GLA 4r6q Open in New Window Bound ligand 4 1
GLA 4rk9 Open in New Window s 4 2
GLA 4ucf Open in New Window Bound ligand 7 1
GLA 4uoz Open in New Window Bound ligand 3 1
GLA 4ut5 Open in New Window s 2 1
GLA 4wzt Open in New Window s 2 1
GLA 4x05 Open in New Window s 8 2
GLA 4x06 Open in New Window s 4 2
GLA 4x07 Open in New Window s 2 1
GLA 4xkw Open in New Window s 1 1
GLA 4xla Open in New Window s 1 1
GLA 4xle Open in New Window s 1 1
GLA 4xlf Open in New Window s 1 1
GLA 4xm3 Open in New Window s 1 1
GLA 4xmy Open in New Window s 1 1
GLA 4xn3 Open in New Window s 1 1
GLA 4xop Open in New Window s 1 1
GLA 4xor Open in New Window s 1 1
GLA 4xot Open in New Window s 1 1
GLA 4xps Open in New Window Bound ligand 1 1
GLA 4xr6 Open in New Window s 1 1
GLA 4yej Open in New Window s 1 1
GLA 4yel Open in New Window s 1 1
GLA 4z3e Open in New Window s 1 1
GLA 4z3f Open in New Window s 1 1
GLA 4z3g Open in New Window s 2 1
GLA 4z3h Open in New Window s 1 1
GLA 4z4y Open in New Window s 2 2
GLA 4z4z Open in New Window s 4 2
GLA 4zfw Open in New Window Bound ligand 1 1
GLA 4zs9 Open in New Window s 2 1
GLA 4zza Open in New Window s 2 1
GLA 5a6z Open in New Window s 2 1
GLA 5abp Open in New Window Bound ligand 1 1
GLA 5ajb Open in New Window s 1 1
GLA 5boa Open in New Window s 6 1
GLA 5cb7 Open in New Window s 2 1
GLA 5d61 Open in New Window s 5 3
GLA 5d62 Open in New Window s 5 3
GLA 5d63 Open in New Window s 5 3
GLA 5dnf Open in New Window Bound ligand 6 1
GLA 5e1q Open in New Window s 2 1
GLA 5elb Open in New Window Bound ligand 10 1
GLA 5eld Open in New Window Bound ligand 1 1
GLA 5f7w Open in New Window s 2 1
GLA 5f8w Open in New Window Bound ligand 5 1
GLA 5f90 Open in New Window s 5 2
GLA 5f9d Open in New Window s 1 1
GLA 5fkc Open in New Window s 2 1
GLA 5iyp Open in New Window s 2 1
GLA 5iyq Open in New Window s 4 2
GLA 5j51 Open in New Window s 4 2
GLA 5jm1 Open in New Window s 1 1
GLA 5lfe Open in New Window s 2 2
GLA 5lkc Open in New Window s 2 1
GLA 5lsh Open in New Window s 2 2
GLA 5mu9 Open in New Window s 5 3
GLA 5o7u Open in New Window s 1 1
GLA 5o7v Open in New Window s 2 1
GLA 5o7w Open in New Window s 1 1
GLA 5ofx Open in New Window s 7 1
GLA 5t54 Open in New Window s 2 1
GLA 5t55 Open in New Window s 1 1
GLA 5tip Open in New Window s 12 4
GLA 5tiq Open in New Window s 6 2
GLA 5tjn Open in New Window s 1 1
GLA 5tjo Open in New Window s 1 1
GLA 5vxx Open in New Window s 21 1
GLA 5x4a Open in New Window s 10 1
GLA 5zho Open in New Window s 1 1
GLA 5zv5 Open in New Window s 2 1
GLA 5zv7 Open in New Window s 4 2
GLA 6e0w Open in New Window s 2 1
GLA 6ely Open in New Window s 1 1
GLA 6eon Open in New Window Bound ligand 1 1
GLA 6epy Open in New Window s 4 1
GLA 6epz Open in New Window s 4 1
GLA 6eq0 Open in New Window Bound ligand 2 1
GLA 6f7k Open in New Window s 12 4
GLA 6g0x Open in New Window s 1 1
GLA 6gvp Open in New Window s 1 1
GLA 6gvr Open in New Window s 1 1
GLA 6h0h Open in New Window Bound ligand 2 1
GLA 6hf4 Open in New Window s 1 1
GLA 6hpf Open in New Window s 2 2
GLA 6ksr Open in New Window Bound ligand 1 1
GLA 6lcl Open in New Window s 6 2
GLA 6lik Open in New Window Bound ligand 1 1
GLA 6n1b Open in New Window s 1 1
GLA 6p3r Open in New Window s 1 1
GLA 6p3s Open in New Window s 2 2
GLA 6phv Open in New Window Bound ligand 1 1
GLA 6phw Open in New Window s 1 1
GLA 6phx Open in New Window s 1 1
GLA 6phy Open in New Window s 3 3
GLA 6pi0 Open in New Window s 1 1
GLA 6pql Open in New Window s 4 1
GLA 6pre Open in New Window s 12 3
GLA 6prg Open in New Window s 4 2
GLA 6t1d Open in New Window s 12 1
GLA 6ter Open in New Window Bound ligand 4 1
GLA 6tig Open in New Window s 3 2
GLA 6tsl Open in New Window s 3 3
GLA 6tsm Open in New Window s 3 3
GLA 6tsn Open in New Window s 4 3
GLA 6tso Open in New Window s 5 3
GLA 6tsp Open in New Window s 4 3
GLA 6tsq Open in New Window s 5 3
GLA 6tsr Open in New Window s 5 3
GLA 6ug7 Open in New Window s 1 1
GLA 6ug8 Open in New Window s 1 1
GLA 6ug9 Open in New Window s 3 1
GLA 6yh0 Open in New Window s 5 5
GLA 6zv5 Open in New Window s 2 1
GLA 6zzw Open in New Window s 3 2
GLA 7b6s Open in New Window s 10 2
GLA 7b6t Open in New Window s 7 2
GLA 7b6u Open in New Window s 10 1
GLA 7b6v Open in New Window s 10 2
GLA 7byt Open in New Window Bound ligand 1 1
GLA 7eqt Open in New Window s 1 1
GLA 7er1 Open in New Window s 1 1
GLA 7exj Open in New Window s 2 1
GLA 7exr Open in New Window s 4 2
GLA 7jw4 Open in New Window Bound ligand 2 1
GLA 7jwf Open in New Window s 4 1
GLA 7kmo Open in New Window Bound ligand 1 1
GLA 7mzs Open in New Window Bound ligand 1 1
GLA 7p8h Open in New Window s 2 1
GLA 7qqh Open in New Window s 4 1
GLA 7r55 Open in New Window s 4 1
GLA 7rcl Open in New Window Bound ligand 4 1
GLA 7rcm Open in New Window Bound ligand 2 1
GLA 7s49 Open in New Window Bound ligand 2 1
GLA 7s4c Open in New Window Bound ligand 2 1
GLA 7uem Open in New Window s 2 1
GLA 7uen Open in New Window s 1 1
GLA 8abp Open in New Window Bound ligand 1 1
GLA 8agk Open in New Window s 1 1
GLA 8beu Open in New Window s 4 1
GLA 8ibs Open in New Window Bound ligand 6 1
GLA 8j51 Open in New Window Bound ligand 2 1
GLA 8j52 Open in New Window Bound ligand 2 1
GLA 8pvs Open in New Window Bound ligand 2 1
GLA 8wa2 Open in New Window Bound ligand 62 1
GLA 9abp Open in New Window Bound ligand 1 1
GLA 9b4h Open in New Window Bound ligand 26 1
GLA 7l16 Open in New Window Sub-component 1 1