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1E8 : Summary
Code
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1E8
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One-letter code
|
X
|
Molecule name
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1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one
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Synonyms
|
Imbruvica
PCI-32765
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Systematic names
|
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Formula
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C25 H24 N6 O2
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Formal charge
|
0
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Molecular weight
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440.497 Da
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SMILES
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Type | Program | Version | Descriptor |
SMILES
|
ACDLabs |
12.01 |
n1c(c2c(nc1)n(nc2c3ccc(cc3)Oc4ccccc4)C5CCCN(C5)C(=O)\C=C)N |
SMILES
|
CACTVS |
3.385 |
Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)[CH]5CCCN(C5)C(=O)C=C |
SMILES
|
OpenEye OEToolkits |
1.7.6 |
C=CC(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N |
Canonical SMILES
|
CACTVS |
3.385 |
Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)[C@@H]5CCCN(C5)C(=O)C=C |
Canonical SMILES
|
OpenEye OEToolkits |
1.7.6 |
C=CC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N |
|
IUPAC InChI | InChI=1S/C25H24N6O2/c1-2-21(32)30-14-6-7-18(15-30)31-25-22(24(26)27-16-28-25)23(29-31)17-10-12-20(13-11-17)33-19-8-4-3-5-9-19/h2-5,8-13,16,18H,1,6-7,14-15H2,(H2,26,27,28)/t18-/m1/s1 |
IUPAC InChI key | XYFPWWZEPKGCCK-GOSISDBHSA-N |
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wwPDB Information |
Atom count
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57 (33 without Hydrogen)
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Polymer type
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Bound ligand
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Type description
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NON-POLYMER
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Type code
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HETAIN
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Is modified
|
No
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Standard parent
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Not Assigned
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Defined at
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2012-12-18
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Last modified at
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2020-05-26
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Status
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Released
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Obsoleted
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Not Assigned
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1E8 : Atoms of Molecule
Total Number of Atoms: 57
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
0.833 |
4.451 |
-0.243 |
2 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
2.098 |
4.217 |
-0.544 |
3 |
N3 |
N |
N3 |
N |
Y |
N |
0 |
2.593 |
3.003 |
-0.638 |
4 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
1.823 |
1.936 |
-0.428 |
5 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
0.468 |
2.136 |
-0.104 |
6 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
-0.014 |
3.452 |
-0.016 |
7 |
CAA |
C |
CAA |
N |
N |
N |
0 |
8.341 |
-2.305 |
1.251 |
8 |
NAB |
N |
NAB |
N |
N |
N |
0 |
-1.336 |
3.702 |
0.299 |
9 |
OAC |
O |
OAC |
N |
N |
N |
0 |
6.032 |
-0.963 |
1.902 |
10 |
CAD |
C |
CAD |
N |
N |
N |
0 |
7.286 |
-2.278 |
0.442 |
11 |
CAE |
C |
CAE |
N |
Y |
N |
0 |
-7.739 |
-2.398 |
-1.351 |
12 |
CAF |
C |
CAF |
N |
Y |
N |
0 |
-8.32 |
-1.908 |
-0.196 |
13 |
CAG |
C |
CAG |
N |
Y |
N |
0 |
-6.392 |
-2.195 |
-1.59 |
14 |
CAI |
C |
CAI |
N |
Y |
N |
0 |
-7.556 |
-1.216 |
0.723 |
15 |
CAJ |
C |
CAJ |
N |
Y |
N |
0 |
-5.625 |
-1.498 |
-0.676 |
16 |
CAK |
C |
CAK |
N |
Y |
N |
0 |
-3.875 |
0.855 |
0.059 |
17 |
CAL |
C |
CAL |
N |
Y |
N |
0 |
-3.128 |
-0.694 |
1.743 |
18 |
CAM |
C |
CAM |
N |
Y |
N |
0 |
-2.566 |
1.138 |
-0.267 |
19 |
CAN |
C |
CAN |
N |
Y |
N |
0 |
-1.816 |
-0.412 |
1.425 |
20 |
CAO |
C |
CAO |
N |
N |
N |
0 |
4.487 |
-1.628 |
-2.301 |
21 |
CAP |
C |
CAP |
N |
N |
N |
0 |
3.146 |
-0.969 |
-1.971 |
22 |
CAQ |
C |
CAQ |
N |
N |
N |
0 |
4.93 |
-2.494 |
-1.118 |
23 |
CAR |
C |
CAR |
N |
N |
N |
0 |
3.737 |
-0.914 |
0.455 |
24 |
NAU |
N |
NAU |
N |
Y |
N |
0 |
0.835 |
-0.071 |
-0.146 |
25 |
OAV |
O |
OAV |
N |
N |
N |
0 |
-5.451 |
-0.33 |
1.389 |
26 |
CAW |
C |
CAW |
N |
N |
N |
0 |
6.054 |
-1.593 |
0.862 |
27 |
CAY |
C |
CAY |
N |
Y |
N |
0 |
-6.205 |
-1.011 |
0.486 |
28 |
CAZ |
C |
CAZ |
N |
Y |
N |
0 |
-4.16 |
-0.058 |
1.066 |
29 |
CBA |
C |
CBA |
N |
Y |
N |
0 |
-1.526 |
0.505 |
0.415 |
30 |
CBB |
C |
CBB |
N |
Y |
N |
0 |
-0.118 |
0.806 |
0.066 |
31 |
CBE |
C |
CBE |
R |
N |
N |
0 |
3.307 |
-0.066 |
-0.746 |
32 |
NBF |
N |
NBF |
N |
Y |
N |
0 |
2.03 |
0.589 |
-0.45 |
33 |
NBG |
N |
NBG |
N |
N |
N |
0 |
4.948 |
-1.664 |
0.095 |
34 |
H2 |
H |
H2 |
N |
N |
N |
0 |
2.752 |
5.058 |
-0.72 |
35 |
HAA |
H |
HAA |
N |
N |
N |
0 |
8.293 |
-1.823 |
2.217 |
36 |
HAAA |
H |
HAAA |
N |
N |
N |
0 |
9.245 |
-2.807 |
0.943 |
37 |
HNAB |
H |
HNAB |
N |
N |
N |
0 |
-1.65 |
4.616 |
0.38 |
38 |
HNAA |
H |
HNAA |
N |
N |
N |
0 |
-1.949 |
2.964 |
0.439 |
39 |
HAD |
H |
HAD |
N |
N |
N |
0 |
7.334 |
-2.759 |
-0.524 |
40 |
HAE |
H |
HAE |
N |
N |
N |
0 |
-8.337 |
-2.943 |
-2.066 |
41 |
HAF |
H |
HAF |
N |
N |
N |
0 |
-9.373 |
-2.068 |
-0.012 |
42 |
HAG |
H |
HAG |
N |
N |
N |
0 |
-5.939 |
-2.582 |
-2.491 |
43 |
HAI |
H |
HAI |
N |
N |
N |
0 |
-8.011 |
-0.833 |
1.625 |
44 |
HAJ |
H |
HAJ |
N |
N |
N |
0 |
-4.573 |
-1.34 |
-0.863 |
45 |
HAK |
H |
HAK |
N |
N |
N |
0 |
-4.68 |
1.349 |
-0.465 |
46 |
HAL |
H |
HAL |
N |
N |
N |
0 |
-3.352 |
-1.403 |
2.525 |
47 |
HAM |
H |
HAM |
N |
N |
N |
0 |
-2.345 |
1.848 |
-1.05 |
48 |
HAN |
H |
HAN |
N |
N |
N |
0 |
-1.013 |
-0.9 |
1.958 |
49 |
HAO |
H |
HAO |
N |
N |
N |
0 |
4.377 |
-2.252 |
-3.188 |
50 |
HAOA |
H |
HAOA |
N |
N |
N |
0 |
5.234 |
-0.857 |
-2.489 |
51 |
HAP |
H |
HAP |
N |
N |
N |
0 |
2.816 |
-0.371 |
-2.821 |
52 |
HAPA |
H |
HAPA |
N |
N |
N |
0 |
2.405 |
-1.739 |
-1.76 |
53 |
HAQ |
H |
HAQ |
N |
N |
N |
0 |
4.23 |
-3.319 |
-0.986 |
54 |
HAQA |
H |
HAQA |
N |
N |
N |
0 |
5.929 |
-2.888 |
-1.308 |
55 |
HAR |
H |
HAR |
N |
N |
N |
0 |
3.949 |
-0.264 |
1.304 |
56 |
HARA |
H |
HARA |
N |
N |
N |
0 |
2.939 |
-1.609 |
0.716 |
57 |
HBE |
H |
HBE |
N |
N |
N |
0 |
4.066 |
0.69 |
-0.948 |
1E8 : Chemical Bonds
Total Number of Bonds: 61
1E8 : Used in PDB Entries
Total Number of PDB Entries: 7
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