Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Z9Z    

Bonds between two atoms of the molecule

Total Number of Bonds: 103


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N05 C06 N C sing 1.32 N Y
2 N05 C04 N C doub 1.29 N Y
3 C07 C06 C C sing 1.51 N N
4 C07 N08 C N sing 1.47 N N
5 C03 C02 C C sing 1.53 N N
6 C02 C04 C C sing 1.51 N N
7 C02 C01 C C sing 1.53 N N
8 C06 C49 C C doub 1.34 N Y
9 C04 S50 C S sing 1.71 N Y
10 C49 S50 C S sing 1.76 N Y
11 N08 C09 N C sing 1.46 N N
12 N08 C10 N C sing 1.35 N N
13 O11 C10 O C doub 1.22 N N
14 C10 N12 C N sing 1.35 N N
15 N12 C13 N C sing 1.47 N N
16 C42 C43 C C doub 1.38 N Y
17 C42 C41 C C sing 1.38 N Y
18 C35 C36 C C doub 1.38 N Y
19 C35 C34 C C sing 1.39 N Y
20 C36 N37 C N sing 1.32 N Y
21 C43 C44 C C sing 1.38 N Y
22 C13 C14 C C sing 1.51 N N
23 C13 C46 C C sing 1.53 N N
24 C41 C40 C C doub 1.38 N Y
25 C48 C46 C C sing 1.53 N N
26 C34 C33 C C doub 1.39 N Y
27 C14 O15 C O doub 1.21 N N
28 C14 N16 C N sing 1.35 N N
29 N37 C38 N C doub 1.32 N Y
30 C44 C45 C C doub 1.38 N Y
31 N16 C17 N C sing 1.46 N N
32 C46 C47 C C sing 1.53 N N
33 C40 C45 C C sing 1.38 N Y
34 C40 C39 C C sing 1.51 N N
35 C33 C38 C C sing 1.38 N Y
36 C33 C32 C C sing 1.51 N N
37 C17 C39 C C sing 1.53 N N
38 C17 C18 C C sing 1.53 N N
39 O31 C32 O C sing 1.45 N N
40 O31 C29 O C sing 1.35 N N
41 C18 C19 C C sing 1.53 N N
42 N28 C29 N C sing 1.35 N N
43 N28 C20 N C sing 1.47 N N
44 C29 O30 C O doub 1.22 N N
45 C20 C19 C C sing 1.53 N N
46 C20 C21 C C sing 1.53 N N
47 C24 C23 C C doub 1.38 N Y
48 C24 C25 C C sing 1.38 N Y
49 C23 C22 C C sing 1.38 N Y
50 C25 C26 C C doub 1.38 N Y
51 C22 C21 C C sing 1.51 N N
52 C22 C27 C C doub 1.38 N Y
53 C26 C27 C C sing 1.38 N Y
54 C32 H1 C H sing 1.09 N N
55 C32 H2 C H sing 1.09 N N
56 C38 H3 C H sing 1.08 N N
57 C36 H4 C H sing 1.08 N N
58 C35 H5 C H sing 1.08 N N
59 C34 H6 C H sing 1.08 N N
60 N28 H7 N H sing 0.97 N N
61 C20 H8 C H sing 1.09 N N
62 C21 H9 C H sing 1.09 N N
63 C21 H10 C H sing 1.09 N N
64 C27 H11 C H sing 1.08 N N
65 C26 H12 C H sing 1.08 N N
66 C25 H13 C H sing 1.08 N N
67 C24 H14 C H sing 1.08 N N
68 C23 H15 C H sing 1.08 N N
69 C19 H16 C H sing 1.09 N N
70 C19 H17 C H sing 1.09 N N
71 C18 H18 C H sing 1.09 N N
72 C18 H19 C H sing 1.09 N N
73 C17 H20 C H sing 1.09 N N
74 C39 H21 C H sing 1.09 N N
75 C39 H22 C H sing 1.09 N N
76 C45 H23 C H sing 1.08 N N
77 C44 H24 C H sing 1.08 N N
78 C43 H25 C H sing 1.08 N N
79 C42 H26 C H sing 1.08 N N
80 C41 H27 C H sing 1.08 N N
81 N16 H28 N H sing 0.97 N N
82 C13 H29 C H sing 1.09 N N
83 C46 H30 C H sing 1.09 N N
84 C48 H31 C H sing 1.09 N N
85 C48 H32 C H sing 1.09 N N
86 C48 H33 C H sing 1.09 N N
87 C47 H34 C H sing 1.09 N N
88 C47 H35 C H sing 1.09 N N
89 C47 H36 C H sing 1.09 N N
90 N12 H37 N H sing 0.97 N N
91 C09 H38 C H sing 1.09 N N
92 C09 H39 C H sing 1.09 N N
93 C09 H40 C H sing 1.09 N N
94 C07 H41 C H sing 1.09 N N
95 C07 H42 C H sing 1.09 N N
96 C49 H43 C H sing 1.08 N N
97 C02 H44 C H sing 1.09 N N
98 C03 H45 C H sing 1.09 N N
99 C03 H46 C H sing 1.09 N N
100 C03 H47 C H sing 1.09 N N
101 C01 H48 C H sing 1.09 N N
102 C01 H49 C H sing 1.09 N N
103 C01 H50 C H sing 1.09 N N