Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Z9Z    

Bonds between two atoms of the molecule

Total Number of Bonds: 103


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N05 C06 N C sing 1.3183843 N Y
2 N05 C04 N C doub 1.2905538 N Y
3 C07 C06 C C sing 1.5066556 N N
4 C07 N08 C N sing 1.4650904 N N
5 C03 C02 C C sing 1.5301664 N N
6 C02 C04 C C sing 1.5069233 N N
7 C02 C01 C C sing 1.5302105 N N
8 C06 C49 C C doub 1.3369468 N Y
9 C04 S50 C S sing 1.7098757 N Y
10 C49 S50 C S sing 1.7618042 N Y
11 N08 C09 N C sing 1.4646573 N N
12 N08 C10 N C sing 1.3471354 N N
13 O11 C10 O C doub 1.2170514 N N
14 C10 N12 C N sing 1.3478183 N N
15 N12 C13 N C sing 1.465561 N N
16 C42 C43 C C doub 1.3826113 N Y
17 C42 C41 C C sing 1.3818773 N Y
18 C35 C36 C C doub 1.3824493 N Y
19 C35 C34 C C sing 1.3860812 N Y
20 C36 N37 C N sing 1.3175864 N Y
21 C43 C44 C C sing 1.3823379 N Y
22 C13 C14 C C sing 1.5071605 N N
23 C13 C46 C C sing 1.5294107 N N
24 C41 C40 C C doub 1.3826385 N Y
25 C48 C46 C C sing 1.5300086 N N
26 C34 C33 C C doub 1.3861493 N Y
27 C14 O15 C O doub 1.2123885 N N
28 C14 N16 C N sing 1.3485956 N N
29 N37 C38 N C doub 1.3192191 N Y
30 C44 C45 C C doub 1.3822626 N Y
31 N16 C17 N C sing 1.4649262 N N
32 C46 C47 C C sing 1.5302824 N N
33 C40 C45 C C sing 1.3826113 N Y
34 C40 C39 C C sing 1.5066167 N N
35 C33 C38 C C sing 1.3821136 N Y
36 C33 C32 C C sing 1.5067767 N N
37 C17 C39 C C sing 1.529985 N N
38 C17 C18 C C sing 1.5301876 N N
39 O31 C32 O C sing 1.451563 N N
40 O31 C29 O C sing 1.3467984 N N
41 C18 C19 C C sing 1.5298464 N N
42 N28 C29 N C sing 1.3472334 N N
43 N28 C20 N C sing 1.4655818 N N
44 C29 O30 C O doub 1.2153596 N N
45 C20 C19 C C sing 1.5301876 N N
46 C20 C21 C C sing 1.529985 N N
47 C24 C23 C C doub 1.3822012 N Y
48 C24 C25 C C sing 1.3820366 N Y
49 C23 C22 C C sing 1.3820992 N Y
50 C25 C26 C C doub 1.3833803 N Y
51 C22 C21 C C sing 1.5062964 N N
52 C22 C27 C C doub 1.3823379 N Y
53 C26 C27 C C sing 1.3822626 N Y
54 C32 H1 C H sing 1.0898573 N N
55 C32 H2 C H sing 1.0904242 N N
56 C38 H3 C H sing 1.0793188 N N
57 C36 H4 C H sing 1.0807701 N N
58 C35 H5 C H sing 1.0801097 N N
59 C34 H6 C H sing 1.0809815 N N
60 N28 H7 N H sing 0.9706462 N N
61 C20 H8 C H sing 1.0896142 N N
62 C21 H9 C H sing 1.090819 N N
63 C21 H10 C H sing 1.0894241 N N
64 C27 H11 C H sing 1.0797361 N N
65 C26 H12 C H sing 1.0798898 N N
66 C25 H13 C H sing 1.0804323 N N
67 C24 H14 C H sing 1.079994 N N
68 C23 H15 C H sing 1.0806396 N N
69 C19 H16 C H sing 1.0897523 N N
70 C19 H17 C H sing 1.0907547 N N
71 C18 H18 C H sing 1.0905013 N N
72 C18 H19 C H sing 1.0897954 N N
73 C17 H20 C H sing 1.0897862 N N
74 C39 H21 C H sing 1.0902848 N N
75 C39 H22 C H sing 1.0896467 N N
76 C45 H23 C H sing 1.0801911 N N
77 C44 H24 C H sing 1.0797801 N N
78 C43 H25 C H sing 1.0795467 N N
79 C42 H26 C H sing 1.0801911 N N
80 C41 H27 C H sing 1.0797801 N N
81 N16 H28 N H sing 0.9697082 N N
82 C13 H29 C H sing 1.0900477 N N
83 C46 H30 C H sing 1.0899619 N N
84 C48 H31 C H sing 1.0904889 N N
85 C48 H32 C H sing 1.0903435 N N
86 C48 H33 C H sing 1.089538 N N
87 C47 H34 C H sing 1.0901234 N N
88 C47 H35 C H sing 1.089313 N N
89 C47 H36 C H sing 1.0904889 N N
90 N12 H37 N H sing 0.9694457 N N
91 C09 H38 C H sing 1.0898045 N N
92 C09 H39 C H sing 1.0898343 N N
93 C09 H40 C H sing 1.0906829 N N
94 C07 H41 C H sing 1.089639 N N
95 C07 H42 C H sing 1.0897288 N N
96 C49 H43 C H sing 1.0798246 N N
97 C02 H44 C H sing 1.0898849 N N
98 C03 H45 C H sing 1.0908822 N N
99 C03 H46 C H sing 1.0892658 N N
100 C03 H47 C H sing 1.0902265 N N
101 C01 H48 C H sing 1.0898849 N N
102 C01 H49 C H sing 1.0903156 N N
103 C01 H50 C H sing 1.0892658 N N