Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YPZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C5' C4' C C doub 1.38 N Y
2 C5' C6' C C sing 1.38 N Y
3 C4' C3' C C sing 1.38 N Y
4 C6' C1' C C doub 1.39 N Y
5 C3' C2' C C doub 1.38 N Y
6 C1' C2' C C sing 1.39 N Y
7 C1' NX1 C N sing 1.39 N N
8 NX1 NX2 N N sing 1.29 N N
9 OH CZ O C sing 1.36 N N
10 N CA N C sing 1.47 N N
11 NX2 CE2 N C doub 1.33 Z N
12 CZ CE2 C C sing 1.46 N N
13 CZ CE1 C C doub 1.37 N N
14 CE2 CD2 C C sing 1.42 N N
15 CE1 CD1 C C sing 1.4 N N
16 CD2 CG C C doub 1.35 N N
17 CD1 CG C C sing 1.41 N N
18 CD1 OX1 C O doub 1.22 N N
19 CA CB C C sing 1.53 N N
20 CA C C C sing 1.51 N N
21 CG CB C C sing 1.51 N N
22 C O C O doub 1.21 N N
23 C OXT C O sing 1.34 N N
24 C5' H5' C H sing 1.08 N N
25 C4' H4' C H sing 1.08 N N
26 C3' H3' C H sing 1.08 N N
27 C2' H2' C H sing 1.08 N N
28 C6' H6' C H sing 1.08 N N
29 NX1 H1 N H sing 0.97 N N
30 N H N H sing 1.01 N N
31 N H2 N H sing 1.01 N N
32 CA HA C H sing 1.09 N N
33 CB HB2 C H sing 1.09 N N
34 CB HB3 C H sing 1.09 N N
35 CD2 HD2 C H sing 1.08 N N
36 CE1 HE1 C H sing 1.08 N N
37 OH HH O H sing 0.97 N N
38 OXT HXT O H sing 0.97 N N