Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : Y38    

Bonds between two atoms of the molecule

Total Number of Bonds: 64


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C32 C33 C C doub 1.38 N Y
2 C32 C31 C C sing 1.38 N Y
3 C33 C3B C C sing 1.38 N Y
4 C31 C34 C C doub 1.38 N Y
5 C3B C29 C C doub 1.4 N Y
6 C34 C29 C C sing 1.4 N Y
7 C29 C27 C C sing 1.48 N N
8 O28 C27 O C doub 1.22 N N
9 C27 N26 C N sing 1.35 N N
10 N26 C25 N C sing 1.47 N N
11 C25 C24 C C sing 1.53 N N
12 C20 C18 C C sing 1.53 N N
13 C18 C19 C C sing 1.53 N N
14 C18 C17 C C sing 1.53 N N
15 C24 N16 C N sing 1.46 N N
16 N16 C17 N C sing 1.47 N N
17 N16 S13 N S sing 1.66 N N
18 C17 C21 C C sing 1.51 N N
19 O22 C21 O C doub 1.21 N N
20 C21 O23 C O sing 1.34 N N
21 S13 O14 S O doub 1.42 N N
22 S13 O15 S O doub 1.42 N N
23 S13 C10 S C sing 1.76 N N
24 C10 C9 C C doub 1.38 N Y
25 C10 C11 C C sing 1.38 N Y
26 C9 C8 C C sing 1.38 N Y
27 C11 C12 C C doub 1.38 N Y
28 C8 C7 C C doub 1.39 N Y
29 C12 C7 C C sing 1.39 N Y
30 C7 C1 C C sing 1.48 N N
31 C2 C1 C C doub 1.39 N Y
32 C2 C3 C C sing 1.38 N Y
33 C1 C6 C C sing 1.39 N Y
34 C3 C4 C C doub 1.38 N Y
35 C6 C5 C C doub 1.38 N Y
36 C4 C5 C C sing 1.38 N Y
37 C17 H1 C H sing 1.09 N N
38 C18 H2 C H sing 1.09 N N
39 C19 H3 C H sing 1.09 N N
40 C19 H4 C H sing 1.09 N N
41 C19 H5 C H sing 1.09 N N
42 C20 H6 C H sing 1.09 N N
43 C20 H7 C H sing 1.09 N N
44 C20 H8 C H sing 1.09 N N
45 O23 H9 O H sing 0.97 N N
46 C24 H10 C H sing 1.09 N N
47 C24 H11 C H sing 1.09 N N
48 C25 H12 C H sing 1.09 N N
49 C25 H13 C H sing 1.09 N N
50 N26 H14 N H sing 0.97 N N
51 C34 H15 C H sing 1.08 N N
52 C31 H16 C H sing 1.08 N N
53 C32 H17 C H sing 1.08 N N
54 C3B H18 C H sing 1.08 N N
55 C33 H19 C H sing 1.08 N N
56 C11 H20 C H sing 1.08 N N
57 C12 H21 C H sing 1.08 N N
58 C8 H22 C H sing 1.08 N N
59 C9 H23 C H sing 1.08 N N
60 C2 H24 C H sing 1.08 N N
61 C3 H25 C H sing 1.08 N N
62 C4 H26 C H sing 1.08 N N
63 C5 H27 C H sing 1.08 N N
64 C6 H28 C H sing 1.08 N N