Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : XU2    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C5 C6 C C doub 1.38 N Y
2 C5 C1 C C sing 1.39 N Y
3 C6 C7 C C sing 1.39 N Y
4 C1 C2 C C doub 1.38 N Y
5 C7 C8 C C sing 1.47 N N
6 C7 C3 C C doub 1.41 N Y
7 C2 C3 C C sing 1.39 N Y
8 O12 C8 O C doub 1.22 N N
9 C8 N1 C N sing 1.35 N N
10 C3 C4 C C sing 1.47 N N
11 N1 C9 N C sing 1.38 N N
12 C4 C9 C C doub 1.4 N Y
13 C4 C12 C C sing 1.4 N Y
14 N3 C12 N C sing 1.39 N N
15 N3 C13 N C sing 1.4 N N
16 C9 N2 C N sing 1.33 N Y
17 C12 C11 C C doub 1.39 N Y
18 C13 C18 C C doub 1.39 N Y
19 C13 C14 C C sing 1.39 N Y
20 C18 C17 C C sing 1.38 N Y
21 C14 C15 C C doub 1.38 N Y
22 N2 C10 N C doub 1.32 N Y
23 C17 C16 C C doub 1.39 N Y
24 C11 C10 C C sing 1.38 N Y
25 C15 C16 C C sing 1.39 N Y
26 C16 N4 C N sing 1.4 N N
27 O38 C19 O C doub 1.22 N N
28 N4 C19 N C sing 1.35 N N
29 C19 C20 C C sing 1.48 N N
30 C20 C21 C C doub 1.4 N Y
31 C20 C25 C C sing 1.4 N Y
32 C21 C22 C C sing 1.38 N Y
33 C25 C24 C C doub 1.38 N Y
34 C22 C23 C C doub 1.38 N Y
35 C24 C23 C C sing 1.38 N Y
36 C6 H1 C H sing 1.08 N N
37 C5 H2 C H sing 1.08 N N
38 C1 H3 C H sing 1.08 N N
39 C2 H4 C H sing 1.08 N N
40 N1 H5 N H sing 0.97 N N
41 C10 H6 C H sing 1.08 N N
42 C11 H7 C H sing 1.08 N N
43 N3 H8 N H sing 0.97 N N
44 C14 H9 C H sing 1.08 N N
45 C15 H10 C H sing 1.08 N N
46 C18 H11 C H sing 1.08 N N
47 C17 H12 C H sing 1.08 N N
48 N4 H13 N H sing 0.97 N N
49 C21 H14 C H sing 1.08 N N
50 C22 H15 C H sing 1.08 N N
51 C23 H16 C H sing 1.08 N N
52 C24 H17 C H sing 1.08 N N
53 C25 H18 C H sing 1.08 N N