Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : X8U    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C20 O C sing 1.35 N N
2 C20 O1 C O doub 1.22 N N
3 C20 C19 C C sing 1.47 N N
4 C19 N4 C N sing 1.33 N Y
5 C19 C21 C C doub 1.36 N Y
6 N4 C18 N C doub 1.3 N Y
7 C21 C22 C C sing 1.51 N N
8 C21 S2 C S sing 1.71 N Y
9 C22 C23 C C sing 1.53 N N
10 C23 C24 C C sing 1.53 N N
11 C24 C25 C C sing 1.53 N N
12 C25 C26 C C sing 1.51 N N
13 C26 C31 C C sing 1.38 N Y
14 C26 C27 C C doub 1.38 N Y
15 C31 C30 C C doub 1.38 N Y
16 C30 C29 C C sing 1.38 N Y
17 C29 C28 C C doub 1.38 N Y
18 C28 C27 C C sing 1.38 N Y
19 S2 C18 S C sing 1.76 N Y
20 C18 C15 C C sing 1.48 N N
21 C15 C16 C C sing 1.4 N Y
22 C15 C14 C C doub 1.39 N Y
23 C16 C17 C C doub 1.38 N Y
24 C17 C12 C C sing 1.38 N Y
25 C12 C11 C C sing 1.5 N N
26 C12 C13 C C doub 1.4 N Y
27 C11 C10 C C sing 1.53 N N
28 C10 C9 C C sing 1.53 N N
29 C9 C8 C C sing 1.51 N N
30 C14 C13 C C sing 1.39 N Y
31 C13 C8 C C sing 1.48 N N
32 C8 N3 C N doub 1.3 E N
33 N3 N2 N N sing 1.4 N N
34 N2 C7 N C sing 1.38 N N
35 C7 S1 C S sing 1.76 N Y
36 C7 N1 C N doub 1.29 N Y
37 S1 C4 S C sing 1.76 N Y
38 C4 C3 C C sing 1.39 N Y
39 C4 C5 C C doub 1.4 N Y
40 C3 C2 C C doub 1.38 N Y
41 C2 C1 C C sing 1.39 N Y
42 N1 C5 N C sing 1.35 N Y
43 C5 C6 C C sing 1.41 N Y
44 C6 C1 C C doub 1.37 N Y
45 O2 H2 O H sing 0.97 N N
46 C22 H221 C H sing 1.09 N N
47 C22 H222 C H sing 1.09 N N
48 C23 H231 C H sing 1.09 N N
49 C23 H232 C H sing 1.09 N N
50 C24 H241 C H sing 1.09 N N
51 C24 H242 C H sing 1.09 N N
52 C25 H251 C H sing 1.09 N N
53 C25 H252 C H sing 1.09 N N
54 C31 H31 C H sing 1.08 N N
55 C27 H27 C H sing 1.08 N N
56 C30 H30 C H sing 1.08 N N
57 C29 H29 C H sing 1.08 N N
58 C28 H28 C H sing 1.08 N N
59 C16 H16 C H sing 1.08 N N
60 C14 H14 C H sing 1.08 N N
61 C17 H17 C H sing 1.08 N N
62 C11 H111 C H sing 1.09 N N
63 C11 H112 C H sing 1.09 N N
64 C10 H101 C H sing 1.09 N N
65 C10 H102 C H sing 1.09 N N
66 C9 H91C C H sing 1.09 N N
67 C9 H92C C H sing 1.09 N N
68 N2 HA N H sing 0.97 N N
69 C3 H3 C H sing 1.08 N N
70 C2 HB C H sing 1.08 N N
71 C1 H1 C H sing 1.08 N N
72 C6 H6 C H sing 1.08 N N