Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : X0B    

Bonds between two atoms of the molecule

Total Number of Bonds: 75


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C19 O C sing 1.35 N N
2 C19 O C O doub 1.22 N N
3 C19 C18 C C sing 1.47 N N
4 C18 N3 C N sing 1.33 N Y
5 C18 C20 C C doub 1.36 N Y
6 N3 C17 N C doub 1.3 N Y
7 C20 C21 C C sing 1.51 N N
8 C20 S1 C S sing 1.71 N Y
9 C21 C22 C C sing 1.53 N N
10 C22 C23 C C sing 1.53 N N
11 C23 O24 C O sing 1.43 N N
12 O24 C25 O C sing 1.36 N N
13 C25 C30 C C sing 1.39 N Y
14 C25 C26 C C doub 1.39 N Y
15 C30 C29 C C doub 1.38 N Y
16 C29 C28 C C sing 1.38 N Y
17 C28 C31 C C sing 1.51 N N
18 C28 C27 C C doub 1.38 N Y
19 C31 N4 C N sing 1.47 N N
20 C27 C26 C C sing 1.38 N Y
21 S1 C17 S C sing 1.76 N Y
22 C17 C14 C C sing 1.48 N N
23 C14 C15 C C sing 1.4 N Y
24 C14 C13 C C doub 1.39 N Y
25 C15 C16 C C doub 1.38 N Y
26 C16 C11 C C sing 1.38 N Y
27 C11 C10 C C sing 1.51 N N
28 C11 C12 C C doub 1.4 N Y
29 C10 C9 C C sing 1.53 N N
30 C9 C8 C C sing 1.53 N N
31 C8 C7 C C sing 1.51 N N
32 C13 C12 C C sing 1.39 N Y
33 C12 C7 C C sing 1.48 N N
34 C7 N2 C N doub 1.3 E N
35 N2 N1 N N sing 1.4 N N
36 N1 C6 N C sing 1.38 N N
37 C6 S C S sing 1.76 N Y
38 C6 N C N doub 1.29 N Y
39 S C3 S C sing 1.76 N Y
40 C3 C2 C C sing 1.39 N Y
41 C3 C4 C C doub 1.4 N Y
42 C2 C1 C C doub 1.38 N Y
43 C1 C C C sing 1.39 N Y
44 N C4 N C sing 1.35 N Y
45 C4 C5 C C sing 1.41 N Y
46 C5 C C C doub 1.37 N Y
47 O1 H1 O H sing 0.97 N N
48 C21 H211 C H sing 1.09 N N
49 C21 H212 C H sing 1.09 N N
50 C22 H221 C H sing 1.09 N N
51 C22 H222 C H sing 1.09 N N
52 C23 H231 C H sing 1.09 N N
53 C23 H232 C H sing 1.09 N N
54 C30 H30 C H sing 1.08 N N
55 C26 H26 C H sing 1.08 N N
56 C29 H29 C H sing 1.08 N N
57 C31 H311 C H sing 1.09 N N
58 C31 H312 C H sing 1.09 N N
59 C27 H27 C H sing 1.08 N N
60 N4 H41N N H sing 1.01 N N
61 N4 H42N N H sing 1.01 N N
62 C15 H15 C H sing 1.08 N N
63 C13 H13 C H sing 1.08 N N
64 C16 H16 C H sing 1.08 N N
65 C10 H101 C H sing 1.09 N N
66 C10 H102 C H sing 1.09 N N
67 C9 H91C C H sing 1.09 N N
68 C9 H92C C H sing 1.09 N N
69 C8 H81C C H sing 1.09 N N
70 C8 H82C C H sing 1.09 N N
71 N1 HA N H sing 0.97 N N
72 C2 H2 C H sing 1.08 N N
73 C1 HB C H sing 1.08 N N
74 C H C H sing 1.08 N N
75 C5 H5 C H sing 1.08 N N