Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UPE    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP1 P O P doub 1.48 N N
2 O5' P O P sing 1.61 N N
3 OP3 P O P sing 1.61 N N
4 P OP2 P O sing 1.61 N N
5 C1' N1 C N sing 1.46 N N
6 C2 N1 C N sing 1.34 N N
7 N1 C6 N C sing 1.36 N N
8 O2 C2 O C doub 1.22 N N
9 C2 N3 C N sing 1.34 N N
10 N3 C4 N C sing 1.35 N N
11 N3 HN3 N H sing 0.97 N N
12 C4 O4 C O doub 1.22 N N
13 C4 C5 C C sing 1.47 N N
14 C6 C5 C C doub 1.38 N N
15 C5 C21 C C sing 1.47 N N
16 C6 H6 C H sing 1.08 N N
17 C2' C1' C C sing 1.55 N N
18 C1' O4' C O sing 1.44 N N
19 C1' H1' C H sing 1.09 N N
20 C2' C3' C C sing 1.54 N N
21 C2' H2' C H sing 1.09 N N
22 C2' H2'A C H sing 1.09 N N
23 C21 O22 C O doub 1.22 N N
24 C21 N23 C N sing 1.35 N N
25 N23 C24 N C sing 1.46 N N
26 N23 HN23 N H sing 0.97 N N
27 C24 C25 C C sing 1.53 N N
28 C24 H24 C H sing 1.09 N N
29 C24 H24A C H sing 1.09 N N
30 C25 C26 C C sing 1.51 N N
31 C25 H25 C H sing 1.09 N N
32 C25 H25A C H sing 1.09 N N
33 C31 C26 C C doub 1.38 N Y
34 C26 C27 C C sing 1.38 N Y
35 C27 C28 C C doub 1.38 N Y
36 C27 H27 C H sing 1.08 N N
37 C29 C28 C C sing 1.38 N Y
38 C28 H28 C H sing 1.08 N N
39 C30 C29 C C doub 1.38 N Y
40 C29 H29 C H sing 1.08 N N
41 O3' C3' O C sing 1.43 N N
42 C3' C4' C C sing 1.54 N N
43 C3' H3' C H sing 1.09 N N
44 O3' HO3' O H sing 0.97 N N
45 C31 C30 C C sing 1.38 N Y
46 C30 H30 C H sing 1.08 N N
47 C31 H31 C H sing 1.08 N N
48 C4' O4' C O sing 1.44 N N
49 C4' C5' C C sing 1.53 N N
50 C4' H4' C H sing 1.09 N N
51 C5' O5' C O sing 1.43 N N
52 C5' H5' C H sing 1.09 N N
53 C5' H5'A C H sing 1.09 N N
54 OP2 HOP2 O H sing 0.97 N N
55 OP3 HOP3 O H sing 0.97 N N