Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UDX    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1' C2' C C sing 1.53 N N
2 C1' O5' C O sing 1.43 N N
3 C1' O3B C O sing 1.43 N N
4 C1' H1' C H sing 1.09 N N
5 C2' O2' C O sing 1.43 N N
6 C2' C3' C C sing 1.53 N N
7 C2' H2'1 C H sing 1.09 N N
8 O2' HO'2 O H sing 0.97 N N
9 C3' O3' C O sing 1.43 N N
10 C3' C4' C C sing 1.53 N N
11 C3' H3'1 C H sing 1.09 N N
12 O3' HO'3 O H sing 0.97 N N
13 C4' O4' C O sing 1.43 N N
14 C4' C5' C C sing 1.53 N N
15 C4' H4'1 C H sing 1.09 N N
16 O4' HO'4 O H sing 0.97 N N
17 C5' O5' C O sing 1.43 N N
18 C5' H5'1 C H sing 1.09 N N
19 C5' H5'2 C H sing 1.09 N N
20 PB O1B P O doub 1.48 N N
21 PB O2B P O sing 1.61 N N
22 PB O3B P O sing 1.61 N N
23 PB O3A P O sing 1.61 N N
24 O2B HOB2 O H sing 0.97 N N
25 O3A PA O P sing 1.61 N N
26 PA O1A P O doub 1.48 N N
27 PA O2A P O sing 1.61 N N
28 PA O5D P O sing 1.61 N N
29 O2A HOA2 O H sing 0.97 N N
30 O5D C5D O C sing 1.43 N N
31 C5D C4D C C sing 1.53 N N
32 C5D H5A1 C H sing 1.09 N N
33 C5D H5A2 C H sing 1.09 N N
34 C4D O4D C O sing 1.44 N N
35 C4D C3D C C sing 1.54 N N
36 C4D H4A1 C H sing 1.09 N N
37 O4D C1D O C sing 1.44 N N
38 C3D O3D C O sing 1.43 N N
39 C3D C2D C C sing 1.55 N N
40 C3D H3A1 C H sing 1.09 N N
41 O3D HOA3 O H sing 0.97 N N
42 C2D O2D C O sing 1.43 N N
43 C2D C1D C C sing 1.55 N N
44 C2D H2A1 C H sing 1.09 N N
45 O2D HOC2 O H sing 0.97 N N
46 C1D N1 C N sing 1.46 N N
47 C1D H1'1 C H sing 1.09 N N
48 N1 C6 N C sing 1.37 N N
49 N1 C2 N C sing 1.34 N N
50 C6 C5 C C doub 1.35 N N
51 C6 H61 C H sing 1.08 N N
52 C2 O2 C O doub 1.22 N N
53 C2 N3 C N sing 1.35 N N
54 N3 C4 N C sing 1.35 N N
55 N3 HN3 N H sing 0.97 N N
56 C4 O4 C O doub 1.22 N N
57 C4 C5 C C sing 1.42 N N
58 C5 H51 C H sing 1.08 N N