Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UBY    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C6 C1 C C doub 1.38 N Y
2 C1 C2 C C sing 1.38 N Y
3 C1 H1 C H sing 1.08 N N
4 C3 C2 C C doub 1.38 N Y
5 C2 H2 C H sing 1.08 N N
6 C4 C3 C C sing 1.38 N Y
7 C3 H3 C H sing 1.08 N N
8 C5 C4 C C doub 1.38 N Y
9 C7 C4 C C sing 1.51 N N
10 C5 C6 C C sing 1.38 N Y
11 C5 H5 C H sing 1.08 N N
12 C6 H6 C H sing 1.08 N N
13 O8 C7 O C sing 1.45 N N
14 C7 H7 C H sing 1.09 N N
15 C7 H7A C H sing 1.09 N N
16 C9 O8 C O sing 1.35 N N
17 N10 C9 N C sing 1.35 N N
18 O21 C9 O C doub 1.21 N N
19 C11 N10 C N sing 1.46 N N
20 N10 HN10 N H sing 0.97 N N
21 P12 C11 P C sing 1.82 N N
22 C11 H11 C H sing 1.09 N N
23 C11 H11A C H sing 1.09 N N
24 N13 P12 N P sing 1.68 N N
25 P12 O22 P O doub 1.48 N N
26 P12 O23 P O sing 1.61 N N
27 C14 N13 C N sing 1.47 N N
28 N13 HN13 N H sing 1.01 N N
29 C20 C14 C C sing 1.53 N N
30 C14 C15 C C sing 1.51 N N
31 C14 H14 C H sing 1.09 N N
32 C15 O24 C O doub 1.21 N N
33 C15 N16 C N sing 1.35 N N
34 N16 C17 N C sing 1.47 N N
35 N16 HN16 N H sing 0.97 N N
36 C25 C17 C C sing 1.53 N N
37 C17 C18 C C sing 1.51 N N
38 C17 H17 C H sing 1.09 N N
39 C18 O32 C O doub 1.21 N N
40 C18 O19 C O sing 1.34 N N
41 O19 HO19 O H sing 0.97 N N
42 C21 C20 C C sing 1.53 N N
43 C20 H20 C H sing 1.09 N N
44 C20 H20A C H sing 1.09 N N
45 C22 C21 C C sing 1.53 N N
46 C21 C23 C C sing 1.53 N N
47 C21 H21 C H sing 1.09 N N
48 C22 H22 C H sing 1.09 N N
49 C22 H22A C H sing 1.09 N N
50 C22 H22B C H sing 1.09 N N
51 C23 H23 C H sing 1.09 N N
52 C23 H23A C H sing 1.09 N N
53 C23 H23B C H sing 1.09 N N
54 O23 HO23 O H sing 0.97 N N
55 C25 H25 C H sing 1.09 N N
56 C25 H25A C H sing 1.09 N N
57 C25 H25B C H sing 1.09 N N