Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TDW    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 S1 C S sing 1.71 N Y
2 S1 C5 S C sing 1.76 N Y
3 C27 C2 C C sing 1.51 N N
4 C2 N3 C N doub 1.29 N Y
5 C7' N3 C N sing 1.47 N N
6 N3 C4 N C sing 1.32 N Y
7 C4 C5 C C doub 1.34 N Y
8 C4 CM4 C C sing 1.51 N N
9 C5 C6 C C sing 1.51 N N
10 C7 C6 C C sing 1.53 N N
11 C6 H6 C H sing 1.09 N N
12 C6 H6A C H sing 1.09 N N
13 C7 O7 C O sing 1.43 N N
14 C7 H7 C H sing 1.09 N N
15 C7 H7A C H sing 1.09 N N
16 O7 PA O P sing 1.61 N N
17 O3A PA O P sing 1.61 N N
18 O1A PA O P doub 1.48 N N
19 PA O2A P O sing 1.61 N N
20 O3B PB O P doub 1.48 N N
21 O2B PB O P sing 1.61 N N
22 PB O3A P O sing 1.61 N N
23 PB O1B P O sing 1.61 N N
24 C2' N1' C N doub 1.32 N Y
25 N1' C6' N C sing 1.33 N Y
26 O1B HO1B O H sing 0.97 N N
27 N3' C2' N C sing 1.32 N Y
28 CM2 C2' C C sing 1.51 N N
29 O28 C27 O C sing 1.43 N N
30 C27 C29 C C sing 1.53 N N
31 C27 H27 C H sing 1.09 N N
32 O28 HO28 O H sing 0.97 N N
33 C29 H29 C H sing 1.09 N N
34 C29 H29A C H sing 1.09 N N
35 C29 H29B C H sing 1.09 N N
36 O2A HO2A O H sing 0.97 N N
37 O2B HO2B O H sing 0.97 N N
38 N3' C4' N C doub 1.33 N Y
39 N4' C4' N C sing 1.39 N N
40 C4' C5' C C sing 1.4 N Y
41 N4' HN4' N H sing 0.97 N N
42 N4' HN4A N H sing 0.97 N N
43 C5' C7' C C sing 1.51 N N
44 C5' C6' C C doub 1.38 N Y
45 C6' H6' C H sing 1.08 N N
46 C7' H7' C H sing 1.09 N N
47 C7' H7'A C H sing 1.09 N N
48 CM2 HM2 C H sing 1.09 N N
49 CM2 HM2A C H sing 1.09 N N
50 CM2 HM2B C H sing 1.09 N N
51 CM4 HM4 C H sing 1.09 N N
52 CM4 HM4A C H sing 1.09 N N
53 CM4 HM4B C H sing 1.09 N N