Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RPC    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP2 P O P doub 1.48 N N
2 OP5 P2 O P doub 1.48 N N
3 OP6 P2 O P sing 1.61 N N
4 OP1 P O P sing 1.61 N N
5 P O5' P O sing 1.61 N N
6 C5' O5' C O sing 1.43 N N
7 C5' C4' C C sing 1.53 N N
8 P2 O3' P O sing 1.61 N N
9 P2 OP4 P O sing 1.61 N N
10 C3' C4' C C sing 1.54 N N
11 C3' O3' C O sing 1.43 N N
12 C3' C2' C C sing 1.55 N N
13 C4' O4' C O sing 1.44 N N
14 C2' O2' C O sing 1.43 N N
15 C2' C1' C C sing 1.55 N N
16 O4' C1' O C sing 1.44 N N
17 C1' N1 C N sing 1.46 N N
18 C6 N1 C N sing 1.36 N N
19 C6 C5 C C doub 1.35 N N
20 N1 C2 N C sing 1.35 N N
21 C5 C4 C C sing 1.41 N N
22 C2 O2 C O doub 1.22 N N
23 C2 N3 C N sing 1.33 N N
24 C4 N3 C N doub 1.33 N N
25 C4 N4 C N sing 1.38 N N
26 OP1 H1 O H sing 0.97 N N
27 C5' H2 C H sing 1.09 N N
28 C5' H3 C H sing 1.09 N N
29 C4' H4 C H sing 1.09 N N
30 C3' H5 C H sing 1.09 N N
31 C2' H6 C H sing 1.09 N N
32 O2' H7 O H sing 0.97 N N
33 C1' H8 C H sing 1.09 N N
34 C6 H9 C H sing 1.08 N N
35 C5 H10 C H sing 1.08 N N
36 N4 H11 N H sing 0.97 N N
37 N4 H12 N H sing 0.97 N N
38 OP4 H14 O H sing 0.97 N N
39 OP6 H15 O H sing 0.97 N N
40 P OP3 P O sing 1.61 N N
41 OP3 H17 O H sing 0.97 N N