Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : RI8    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N6 C1 N C doub 1.3105865 N Y
2 C1 N2 C N sing 1.3205408 N Y
3 C1 H1 C H sing 1.0797064 N N
4 N2 C3 N C doub 1.3264705 N Y
5 C4 C3 C C sing 1.4069933 N Y
6 C3 N10 C N sing 1.3850827 N N
7 C5 C4 C C doub 1.3924866 N Y
8 C4 S7 C S sing 1.7547733 N Y
9 C9 C5 C C sing 1.4583391 N Y
10 N6 C5 N C sing 1.3476342 N Y
11 C8 S7 C S sing 1.7010208 N Y
12 C9 C8 C C doub 1.3529557 N Y
13 C8 H8 C H sing 1.0804064 N N
14 C11 C9 C C sing 1.4690521 N N
15 N10 HN10 N H sing 0.96956277 N N
16 N10 HN1A N H sing 0.9702505 N N
17 O12 C11 O C doub 1.2168529 N N
18 N13 C11 N C sing 1.347921 N N
19 C14 N13 C N sing 1.4011431 N N
20 N13 HN13 N H sing 0.9697639 N N
21 C15 C14 C C doub 1.3885713 N Y
22 C14 C19 C C sing 1.3907495 N Y
23 F21 C15 F C sing 1.3507794 N N
24 C16 C15 C C sing 1.3893747 N Y
25 N20 C16 N C sing 1.4000664 N N
26 C16 C17 C C doub 1.3886889 N Y
27 C17 C18 C C sing 1.3831937 N Y
28 C17 H17 C H sing 1.079498 N N
29 C18 C19 C C doub 1.3834095 N Y
30 C18 H18 C H sing 1.0794688 N N
31 C19 F22 C F sing 1.3507783 N N
32 S23 N20 S N sing 1.6562684 N N
33 N20 HN20 N H sing 0.96933275 N N
34 O25 S23 O S doub 1.4208621 N N
35 S23 C26 S C sing 1.8142021 N N
36 S23 O24 S O doub 1.4214574 N N
37 C27 C26 C C sing 1.5303911 N N
38 C26 H26 C H sing 1.0897495 N N
39 C26 H26A C H sing 1.0893383 N N
40 C28 C27 C C sing 1.5298007 N N
41 C27 H27 C H sing 1.0897495 N N
42 C27 H27A C H sing 1.0903091 N N
43 C28 H28 C H sing 1.0897495 N N
44 C28 H28A C H sing 1.0893383 N N
45 C28 H28B C H sing 1.0898353 N N