Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P01    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CL1 C5A CL C sing 1.74 N N
2 C5A C6A C C doub 1.38 N Y
3 C5A C4A C C sing 1.38 N Y
4 C6A C1A C C sing 1.39 N Y
5 C6A H6A C H sing 1.08 N N
6 C1A C2A C C doub 1.39 N Y
7 C1A N6 C N sing 1.4 N N
8 C2A C3A C C sing 1.38 N Y
9 C2A H2A C H sing 1.08 N N
10 C3A C4A C C doub 1.38 N Y
11 C3A H3A C H sing 1.08 N N
12 C4A H4A C H sing 1.08 N N
13 N6 C6 N C sing 1.38 N N
14 N6 HN6 N H sing 0.97 N N
15 C6 C5 C C doub 1.41 N Y
16 C6 N1 C N sing 1.33 N Y
17 C5 N7 C N sing 1.36 N Y
18 C5 C4 C C sing 1.4 N Y
19 N7 C8 N C doub 1.3 N Y
20 C4 N9 C N sing 1.37 N Y
21 C4 N3 C N doub 1.33 N Y
22 N9 C10 N C sing 1.47 N N
23 N9 C8 N C sing 1.36 N Y
24 C10 C11 C C sing 1.53 N N
25 C10 C12 C C sing 1.53 N N
26 C10 H10 C H sing 1.09 N N
27 C11 H111 C H sing 1.09 N N
28 C11 H112 C H sing 1.09 N N
29 C11 H113 C H sing 1.09 N N
30 C12 H121 C H sing 1.09 N N
31 C12 H122 C H sing 1.09 N N
32 C12 H123 C H sing 1.09 N N
33 C8 H8 C H sing 1.08 N N
34 N3 C2 N C sing 1.32 N Y
35 C2 N1 C N doub 1.33 N Y
36 C2 N21 C N sing 1.39 N N
37 N21 C22 N C sing 1.46 N N
38 N21 H21 N H sing 0.97 N N
39 C22 C25 C C sing 1.53 N N
40 C22 C23 C C sing 1.53 N N
41 C22 H22 C H sing 1.09 N N
42 C25 C26 C C sing 1.53 N N
43 C25 C27 C C sing 1.53 N N
44 C25 H25 C H sing 1.09 N N
45 C26 H261 C H sing 1.09 N N
46 C26 H262 C H sing 1.09 N N
47 C26 H263 C H sing 1.09 N N
48 C27 H271 C H sing 1.09 N N
49 C27 H272 C H sing 1.09 N N
50 C27 H273 C H sing 1.09 N N
51 C23 O24 C O sing 1.43 N N
52 C23 H231 C H sing 1.09 N N
53 C23 H232 C H sing 1.09 N N
54 O24 H24 O H sing 0.97 N N