Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : L88    

Bonds between two atoms of the molecule

Total Number of Bonds: 146


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C29 S7 C S sing 1.7586501 N Y
2 C29 C20 C C doub 1.3481977 N Y
3 S7 C18 S C sing 1.7577542 N Y
4 C22 C23 C C doub 1.38015 N Y
5 C22 C21 C C sing 1.3932451 N Y
6 C23 C24 C C sing 1.3831981 N Y
7 C20 C21 C C sing 1.484294 N N
8 C20 C19 C C sing 1.3887552 N Y
9 C21 C26 C C doub 1.39351 N Y
10 C15 C28 C C doub 1.3795354 N Y
11 C15 C16 C C sing 1.3960522 N Y
12 C18 C19 C C doub 1.3446479 N Y
13 C18 C16 C C sing 1.478836 N N
14 C24 C25 C C doub 1.3830998 N Y
15 C28 C27 C C sing 1.3834312 N Y
16 C16 C17 C C doub 1.3962901 N Y
17 C26 C25 C C sing 1.3799319 N Y
18 C27 C13 C C sing 1.5070016 N N
19 C27 C14 C C doub 1.3842038 N Y
20 C17 C14 C C sing 1.3799659 N Y
21 C13 C12 C C sing 1.5297104 N N
22 C12 C11 C C sing 1.5069612 N N
23 O2 C11 O C doub 1.2134356 N N
24 O4E C10 O C doub 1.2084291 N N
25 C11 N2 C N sing 1.3471262 N N
26 C10 C9 C C sing 1.5069032 N N
27 C10 O4 C O sing 1.3419303 N N
28 N2 C7 N C sing 1.4648621 N N
29 C9 C8 C C sing 1.5297173 N N
30 C8 C7 C C sing 1.5301638 N N
31 C7 C6 C C sing 1.5063552 N N
32 N1 C6 N C sing 1.3476658 N N
33 N1 C53 N C sing 1.4643381 N N
34 C6 O1 C O doub 1.2134851 N N
35 C53 C54 C C sing 1.5297431 N N
36 C54 C55 C C sing 1.5304055 N N
37 C68 C69 C C sing 1.5300919 N N
38 C68 O67 C O sing 1.428901 N N
39 C69 O70 C O sing 1.4294733 N N
40 C58 O67 C O sing 1.4295611 N N
41 C58 C57 C C sing 1.5300934 N N
42 C55 O56 C O sing 1.4292396 N N
43 C71 O70 C O sing 1.4295923 N N
44 C71 C72 C C sing 1.5298892 N N
45 O56 C57 O C sing 1.428131 N N
46 C72 C73 C C sing 1.5302905 N N
47 C73 N74 C N sing 1.4654402 N N
48 O77 C75 O C doub 1.212981 N N
49 N74 C75 N C sing 1.3476298 N N
50 C75 C76 C C sing 1.5073105 N N
51 C76 C78 C C sing 1.5292606 N N
52 C76 N82 C N sing 1.4659342 N N
53 C78 C83 C C sing 1.5303115 N N
54 O80 C79 O C doub 1.2080997 N N
55 C83 C79 C C sing 1.507141 N N
56 N82 C84 N C sing 1.3473834 N N
57 C79 O81 C O sing 1.3422302 N N
58 C84 O85 C O doub 1.212958 N N
59 C84 C86 C C sing 1.5069559 N N
60 C86 C5 C C sing 1.5295967 N N
61 C88 C89 C C doub 1.3798822 N Y
62 C88 C87 C C sing 1.3834009 N Y
63 C5 C87 C C sing 1.5072578 N N
64 C89 C90 C C sing 1.3959312 N Y
65 C87 C92 C C doub 1.3841572 N Y
66 C1 C99 C C doub 1.3803804 N Y
67 C1 C2 C C sing 1.3834074 N Y
68 C99 C98 C C sing 1.3939649 N Y
69 C90 C93 C C sing 1.4785932 N N
70 C90 C91 C C doub 1.3951706 N Y
71 C92 C91 C C sing 1.3797228 N Y
72 C2 C3 C C doub 1.3836416 N Y
73 C94 C93 C C doub 1.3442563 N Y
74 C94 C95 C C sing 1.3893236 N Y
75 C93 S97 C S sing 1.7575645 N Y
76 C98 C95 C C sing 1.4843673 N N
77 C98 C4 C C doub 1.3927153 N Y
78 C95 C96 C C doub 1.3479737 N Y
79 C3 C4 C C sing 1.3804412 N Y
80 S97 C96 S C sing 1.7580384 N Y
81 C12 H1 C H sing 1.0899161 N N
82 C12 H2 C H sing 1.0896757 N N
83 C13 H3 C H sing 1.0900899 N N
84 C13 H4 C H sing 1.0905421 N N
85 C14 H5 C H sing 1.0792313 N N
86 C17 H6 C H sing 1.0792058 N N
87 C29 H7 C H sing 1.0795008 N N
88 C26 H8 C H sing 1.0801727 N N
89 C25 H9 C H sing 1.0799713 N N
90 C24 H10 C H sing 1.0806346 N N
91 C23 H11 C H sing 1.0804675 N N
92 C22 H12 C H sing 1.0799102 N N
93 C19 H13 C H sing 1.080312 N N
94 C15 H14 C H sing 1.0799171 N N
95 C28 H15 C H sing 1.0803005 N N
96 N2 H16 N H sing 0.9696438 N N
97 C7 H17 C H sing 1.0899954 N N
98 C8 H18 C H sing 1.0904696 N N
99 C8 H19 C H sing 1.089794 N N
100 C9 H20 C H sing 1.0901862 N N
101 C9 H21 C H sing 1.0892814 N N
102 O4 H22 O H sing 0.96698344 N N
103 N1 H23 N H sing 0.9697938 N N
104 C53 H24 C H sing 1.0897404 N N
105 C53 H25 C H sing 1.0899954 N N
106 C54 H26 C H sing 1.0903591 N N
107 C54 H27 C H sing 1.0894673 N N
108 C55 H28 C H sing 1.0897404 N N
109 C55 H29 C H sing 1.0900046 N N
110 C57 H30 C H sing 1.0901532 N N
111 C57 H31 C H sing 1.0901036 N N
112 C58 H32 C H sing 1.0902596 N N
113 C58 H33 C H sing 1.089871 N N
114 C68 H34 C H sing 1.0905617 N N
115 C68 H35 C H sing 1.0900596 N N
116 C69 H36 C H sing 1.0899092 N N
117 C69 H37 C H sing 1.090184 N N
118 C71 H38 C H sing 1.0901573 N N
119 C71 H39 C H sing 1.0892552 N N
120 C72 H40 C H sing 1.0895127 N N
121 C72 H41 C H sing 1.0897816 N N
122 C73 H42 C H sing 1.0901573 N N
123 C73 H43 C H sing 1.0897816 N N
124 N74 H44 N H sing 0.9694153 N N
125 C76 H45 C H sing 1.0901573 N N
126 C78 H46 C H sing 1.0902307 N N
127 C78 H47 C H sing 1.0906782 N N
128 C83 H48 C H sing 1.0895365 N N
129 C83 H49 C H sing 1.0906782 N N
130 O81 H50 O H sing 0.9671696 N N
131 N82 H51 N H sing 0.97010565 N N
132 C86 H52 C H sing 1.0908295 N N
133 C86 H53 C H sing 1.0895224 N N
134 C5 H54 C H sing 1.0899872 N N
135 C5 H55 C H sing 1.0898963 N N
136 C88 H56 C H sing 1.0800657 N N
137 C89 H57 C H sing 1.0800394 N N
138 C91 H58 C H sing 1.0799565 N N
139 C92 H59 C H sing 1.0802695 N N
140 C94 H60 C H sing 1.0808983 N N
141 C96 H61 C H sing 1.0800241 N N
142 C99 H62 C H sing 1.0792706 N N
143 C1 H63 C H sing 1.0793048 N N
144 C2 H64 C H sing 1.0802383 N N
145 C3 H65 C H sing 1.079126 N N
146 C4 H66 C H sing 1.0803046 N N