Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JYI    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAB CBD C C sing 1.53 N N
2 CAA CBD C C sing 1.53 N N
3 CBD CAT C C sing 1.53 N N
4 CBD CBC C C sing 1.51 N N
5 CAT CAH C C sing 1.5 N N
6 CAH CAV C C doub 1.34 N N
7 CBC CAQ C C doub 1.38 N Y
8 CBC CBB C C sing 1.4 N Y
9 CAQ CAL C C sing 1.38 N Y
10 CAV CBB C C sing 1.48 N N
11 CAV CAY C C sing 1.48 N N
12 CBB CAS C C doub 1.39 N Y
13 CAL CAW C C doub 1.4 N Y
14 CAY CAM C C doub 1.39 N Y
15 CAY CAN C C sing 1.39 N Y
16 CAM CAJ C C sing 1.38 N Y
17 CAS CAW C C sing 1.4 N Y
18 CAW CAF C C sing 1.47 N N
19 CAN CAK C C doub 1.38 N Y
20 CAJ CAI C C doub 1.38 N Y
21 CAF CAG C C doub 1.34 E N
22 CAK CAI C C sing 1.38 N Y
23 CAG CBA C C sing 1.47 N N
24 CBA CAP C C doub 1.4 N Y
25 CBA CAX C C sing 1.4 N Y
26 CAP CAO C C sing 1.37 N Y
27 CL CAX CL C sing 1.74 N N
28 CAX CAR C C doub 1.38 N Y
29 CAO CAZ C C doub 1.4 N Y
30 CAR CAZ C C sing 1.4 N Y
31 CAZ CAU C C sing 1.47 N N
32 CAU OAC C O doub 1.22 N N
33 CAU OAD C O sing 1.35 N N
34 CAM H1 C H sing 1.08 N N
35 CAJ H2 C H sing 1.08 N N
36 CAI H3 C H sing 1.08 N N
37 CAK H4 C H sing 1.08 N N
38 CAN H5 C H sing 1.08 N N
39 CAS H6 C H sing 1.08 N N
40 CAH H7 C H sing 1.08 N N
41 CAT H8 C H sing 1.09 N N
42 CAT H9 C H sing 1.09 N N
43 CAA H10 C H sing 1.09 N N
44 CAA H11 C H sing 1.09 N N
45 CAA H12 C H sing 1.09 N N
46 CAB H13 C H sing 1.09 N N
47 CAB H14 C H sing 1.09 N N
48 CAB H15 C H sing 1.09 N N
49 CAQ H16 C H sing 1.08 N N
50 CAL H17 C H sing 1.08 N N
51 CAF H18 C H sing 1.08 N N
52 CAG H19 C H sing 1.08 N N
53 CAP H20 C H sing 1.08 N N
54 CAO H21 C H sing 1.08 N N
55 OAD H22 O H sing 0.97 N N
56 CAR H23 C H sing 1.08 N N