Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HGD    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 CA1 N C sing 1.47 N N
2 CA1 C1 C C sing 1.51 N N
3 CA1 CB1 C C sing 1.53 N N
4 C1 OE1 C O doub 1.21 N N
5 C1 OE2 C O sing 1.34 N N
6 CB1 CG1 C C sing 1.53 N N
7 CG1 CD1 C C sing 1.51 N N
8 CD1 O1 C O doub 1.21 N N
9 CD1 N2 C N sing 1.35 N N
10 N2 CA2 N C sing 1.47 N N
11 CA2 C2 C C sing 1.51 N N
12 CA2 CB2 C C sing 1.53 N N
13 C2 O2 C O doub 1.21 N N
14 C2 N3 C N sing 1.35 N N
15 CB2 SG2 C S sing 1.81 N N
16 N3 CA3 N C sing 1.46 N N
17 CA3 C3 C C sing 1.51 N N
18 C3 OE3 C O doub 1.21 N N
19 C3 OE4 C O sing 1.34 N N
20 N4 CA4 N C sing 1.46 N N
21 N4 C5 N C sing 1.35 N N
22 CA4 C4 C C sing 1.51 N N
23 C4 OE5 C O doub 1.21 N N
24 C4 OE6 C O sing 1.34 N N
25 C5 O5 C O doub 1.21 N N
26 C5 CA5 C C sing 1.51 N N
27 CA5 N5 C N sing 1.47 N N
28 CA5 CB5 C C sing 1.53 N N
29 N5 CD6 N C sing 1.35 N N
30 CB5 SG5 C S sing 1.81 N N
31 CA6 C6 C C sing 1.51 N N
32 CA6 N6 C N sing 1.47 N N
33 CA6 CB6 C C sing 1.53 N N
34 C6 OE7 C O doub 1.21 N N
35 C6 OE8 C O sing 1.34 N N
36 CB6 CG6 C C sing 1.53 N N
37 CG6 CD6 C C sing 1.51 N N
38 CD6 O6 C O doub 1.21 N N
39 SG5 HG1 S HG sing 2.35 N N
40 HG1 SG2 HG S sing 2.35 N N
41 N1 H1 N H sing 1.01 N N
42 N1 H2 N H sing 1.01 N N
43 CA1 H4 C H sing 1.09 N N
44 OE2 H5 O H sing 0.97 N N
45 CB1 H6 C H sing 1.09 N N
46 CB1 H7 C H sing 1.09 N N
47 CG1 H8 C H sing 1.09 N N
48 CG1 H9 C H sing 1.09 N N
49 N2 H10 N H sing 0.97 N N
50 CA2 H11 C H sing 1.09 N N
51 CB2 H12 C H sing 1.09 N N
52 CB2 H13 C H sing 1.09 N N
53 N3 H14 N H sing 0.97 N N
54 CA3 H15 C H sing 1.09 N N
55 CA3 H16 C H sing 1.09 N N
56 OE4 H17 O H sing 0.97 N N
57 N4 H18 N H sing 0.97 N N
58 CA4 H19 C H sing 1.09 N N
59 CA4 H20 C H sing 1.09 N N
60 OE6 H21 O H sing 0.97 N N
61 CA5 H22 C H sing 1.09 N N
62 N5 H23 N H sing 0.97 N N
63 CB5 H24 C H sing 1.09 N N
64 CB5 H25 C H sing 1.09 N N
65 CA6 H26 C H sing 1.09 N N
66 OE8 H27 O H sing 0.97 N N
67 N6 H28 N H sing 1.01 N N
68 N6 H29 N H sing 1.01 N N
69 CB6 H31 C H sing 1.09 N N
70 CB6 H32 C H sing 1.09 N N
71 CG6 H33 C H sing 1.09 N N
72 CG6 H34 C H sing 1.09 N N