Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : H0Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O82 C28 O C sing 1.3466822 N N
2 C28 O81 C O doub 1.2147777 N N
3 C28 C24 C C sing 1.4804033 N N
4 C24 N23 C N doub 1.3265587 N Y
5 C24 C25 C C sing 1.3939131 N Y
6 N23 C22 N C sing 1.3227978 N Y
7 C25 C26 C C doub 1.3865389 N Y
8 C26 C27 C C sing 1.3838663 N Y
9 C27 C22 C C doub 1.3957084 N Y
10 C22 C19 C C sing 1.484006 N N
11 C19 C20 C C sing 1.3949158 N Y
12 C19 C18 C C doub 1.3908472 N Y
13 C20 C21 C C doub 1.3799149 N Y
14 C21 C16 C C sing 1.3850422 N Y
15 C16 C15 C C sing 1.5038834 N N
16 C16 C17 C C doub 1.396115 N Y
17 C15 C14 C C sing 1.5267384 N N
18 C14 C13 C C sing 1.5342119 N N
19 C13 C12 C C sing 1.51396 N N
20 C18 C17 C C sing 1.394477 N Y
21 C17 C12 C C sing 1.4791393 N N
22 C12 N11 C N doub 1.2978601 E N
23 N11 N10 N N sing 1.400673 N N
24 N10 C8 N C sing 1.3808339 N N
25 C8 S9 C S sing 1.7586464 N Y
26 C8 N7 C N doub 1.2886559 N Y
27 S9 C4 S C sing 1.7623305 N Y
28 C4 C3 C C sing 1.3926252 N Y
29 C4 C5 C C doub 1.3981524 N Y
30 C3 C2 C C doub 1.3775812 N Y
31 C2 C1 C C sing 1.3873225 N Y
32 N7 C5 N C sing 1.3471816 N Y
33 C5 C6 C C sing 1.4113855 N Y
34 C6 C1 C C doub 1.3715153 N Y
35 O82 H82 O H sing 0.9676833 N N
36 C25 H25 C H sing 1.080673 N N
37 C26 H26 C H sing 1.0801356 N N
38 C27 H27 C H sing 1.0801597 N N
39 C20 H20 C H sing 1.0798976 N N
40 C18 H18 C H sing 1.0795231 N N
41 C21 H21 C H sing 1.0797898 N N
42 C15 H151 C H sing 1.0902468 N N
43 C15 H152 C H sing 1.0897546 N N
44 C14 H141 C H sing 1.0896568 N N
45 C14 H142 C H sing 1.0898467 N N
46 C13 H131 C H sing 1.0907145 N N
47 C13 H132 C H sing 1.0906131 N N
48 N10 H10 N H sing 0.96921307 N N
49 C3 H3 C H sing 1.0799134 N N
50 C2 H2 C H sing 1.0798708 N N
51 C1 H1 C H sing 1.0803101 N N
52 C6 H6 C H sing 1.0799838 N N