Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : C5I    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.34 N Y
2 C1 C6 C C sing 1.46 N Y
3 C2 N3 C N sing 1.37 N Y
4 N3 C5 N C sing 1.38 N Y
5 C5 C6 C C doub 1.4 N Y
6 C5 N10 C N sing 1.33 N Y
7 C6 C7 C C sing 1.4 N Y
8 C7 C8 C C doub 1.41 N Y
9 C7 N13 C N sing 1.37 N Y
10 C8 C9 C C sing 1.4 N Y
11 C8 N11 C N sing 1.35 N Y
12 C9 N10 C N doub 1.31 N Y
13 N11 N12 N N doub 1.29 N Y
14 N12 N13 N N sing 1.4 N Y
15 N13 C14 N C sing 1.47 N N
16 C14 C16 C C sing 1.53 N N
17 C14 C20 C C sing 1.53 N N
18 C16 C17 C C sing 1.53 N N
19 C17 C18 C C sing 1.53 N N
20 C18 N19 C N sing 1.47 N N
21 N19 C20 N C sing 1.47 N N
22 N19 C21 N C sing 1.35 N N
23 C21 O22 C O doub 1.21 N N
24 C21 C23 C C sing 1.51 N N
25 C23 C24 C C sing 1.47 N N
26 C24 N25 C N trip 1.14 N N
27 C1 H1 C H sing 1.08 N N
28 C2 H2 C H sing 1.08 N N
29 N3 HN3 N H sing 0.97 N N
30 C9 H9 C H sing 1.08 N N
31 C14 H14 C H sing 1.09 N N
32 C16 H16 C H sing 1.09 N N
33 C16 H16A C H sing 1.09 N N
34 C17 H17 C H sing 1.09 N N
35 C17 H17A C H sing 1.09 N N
36 C18 H18 C H sing 1.09 N N
37 C18 H18A C H sing 1.09 N N
38 C20 H20 C H sing 1.09 N N
39 C20 H20A C H sing 1.09 N N
40 C23 H23 C H sing 1.09 N N
41 C23 H23A C H sing 1.09 N N