Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : BLK    

Bonds between two atoms of the molecule

Total Number of Bonds: 75


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N6 C6 N C sing 1.38 N N
2 N1 C6 N C doub 1.33 N Y
3 N1 C2 N C sing 1.32 N Y
4 C6 C5 C C sing 1.41 N Y
5 C2 N3 C N doub 1.32 N Y
6 C5 N7 C N sing 1.35 N Y
7 C5 C4 C C doub 1.41 N Y
8 N7 C8 N C doub 1.3 N Y
9 N3 C4 N C sing 1.33 N Y
10 C4 N9 C N sing 1.37 N Y
11 C8 N9 C N sing 1.36 N Y
12 N9 C1' N C sing 1.46 N N
13 C1' C2' C C sing 1.55 N N
14 C1' O4' C O sing 1.44 N N
15 C2' C3' C C sing 1.55 N N
16 C2' O2' C O sing 1.43 N N
17 O4' C4' O C sing 1.44 N N
18 O1P P O P doub 1.48 N N
19 O2P P O P sing 1.61 N N
20 O5' P O P sing 1.61 N N
21 O5' C5' O C sing 1.43 N N
22 C3' C4' C C sing 1.54 N N
23 C3' O3' C O sing 1.43 N N
24 P O3P P O sing 1.61 N N
25 C4' C5' C C sing 1.53 N N
26 O C O C doub 1.21 N N
27 O3P C O C sing 1.34 N N
28 C CA C C sing 1.51 N N
29 CA N C N sing 1.47 N N
30 CA CB C C sing 1.53 N N
31 CB CG C C sing 1.53 N N
32 CG CD C C sing 1.53 N N
33 CD CE C C sing 1.53 N N
34 CE NZ C N sing 1.47 N N
35 CT2 CT C C sing 1.53 N N
36 CT1 CT C C sing 1.53 N N
37 O2 CZ O C sing 1.35 N N
38 O2 CT O C sing 1.45 N N
39 NZ CZ N C sing 1.35 N N
40 CZ O1 C O doub 1.22 N N
41 CT CT3 C C sing 1.53 N N
42 CT1 H1 C H sing 1.09 N N
43 CT1 H2 C H sing 1.09 N N
44 CT1 H3 C H sing 1.09 N N
45 CT2 H4 C H sing 1.09 N N
46 CT2 H5 C H sing 1.09 N N
47 CT2 H6 C H sing 1.09 N N
48 CT3 H7 C H sing 1.09 N N
49 CT3 H8 C H sing 1.09 N N
50 CT3 H9 C H sing 1.09 N N
51 NZ H10 N H sing 0.97 N N
52 CE H11 C H sing 1.09 N N
53 CE H12 C H sing 1.09 N N
54 CD H13 C H sing 1.09 N N
55 CD H14 C H sing 1.09 N N
56 CG H15 C H sing 1.09 N N
57 CG H16 C H sing 1.09 N N
58 CB H17 C H sing 1.09 N N
59 CB H18 C H sing 1.09 N N
60 CA H19 C H sing 1.09 N N
61 N H20 N H sing 1.01 N N
62 N H21 N H sing 1.01 N N
63 O2P H23 O H sing 0.97 N N
64 C5' H24 C H sing 1.09 N N
65 C5' H25 C H sing 1.09 N N
66 C4' H26 C H sing 1.09 N N
67 C3' H27 C H sing 1.09 N N
68 O3' H28 O H sing 0.97 N N
69 C2' H29 C H sing 1.09 N N
70 O2' H30 O H sing 0.97 N N
71 C1' H31 C H sing 1.09 N N
72 C8 H32 C H sing 1.08 N N
73 C2 H33 C H sing 1.08 N N
74 N6 H34 N H sing 0.97 N N
75 N6 H35 N H sing 0.97 N N