Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6C6    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N1 C N doub 1.3206718 N Y
2 C2 N3 C N sing 1.3166556 N Y
3 O2' C2' O C sing 1.4290773 N N
4 N1 C6 N C sing 1.3298131 N Y
5 N3 C4 N C doub 1.328606 N Y
6 O3' C3' O C sing 1.4283935 N N
7 C2' C3' C C sing 1.544912 N N
8 C2' C1' C C sing 1.5446272 N N
9 C3' C4' C C sing 1.5443766 N N
10 C6 N6 C N sing 1.3835104 N N
11 C6 C5 C C doub 1.4045031 N Y
12 C4 C5 C C sing 1.4051996 N Y
13 C4 N9 C N sing 1.3723626 N Y
14 N6 C61 N C sing 1.465835 N N
15 C63 C62 C C sing 1.5490316 N N
16 C63 C64 C C sing 1.5418823 N N
17 C5 N7 C N sing 1.3548687 N Y
18 C1' N9 C N sing 1.4646819 N N
19 C1' O4' C O sing 1.4442472 N N
20 N9 C8 N C sing 1.363414 N Y
21 C62 C61 C C sing 1.5494422 N N
22 C4' O4' C O sing 1.4446415 N N
23 C4' C5' C C sing 1.5312285 N N
24 C64 C65 C C sing 1.5390162 N N
25 C61 C65 C C sing 1.5421783 N N
26 N7 C8 N C doub 1.3016804 N Y
27 C5' O5' C O sing 1.429493 N N
28 O5' PA O P sing 1.6096154 N N
29 OA3 PA O P doub 1.4792613 N N
30 OA1 PA O P sing 1.610214 N N
31 PA OA2 P O sing 1.6097481 N N
32 C65 H1 C H sing 1.0893939 N N
33 C65 H2 C H sing 1.0897142 N N
34 C64 H3 C H sing 1.0904467 N N
35 C64 H4 C H sing 1.0898628 N N
36 C63 H5 C H sing 1.0901808 N N
37 C63 H6 C H sing 1.0904847 N N
38 C62 H7 C H sing 1.0898097 N N
39 C62 H8 C H sing 1.0895338 N N
40 C61 H9 C H sing 1.0902481 N N
41 N6 H10 N H sing 0.96985924 N N
42 C2 H11 C H sing 1.0795527 N N
43 C8 H12 C H sing 1.0795717 N N
44 C1' H13 C H sing 1.0901147 N N
45 C2' H14 C H sing 1.0901257 N N
46 O2' H15 O H sing 0.96704656 N N
47 C3' H16 C H sing 1.0899032 N N
48 O3' H17 O H sing 0.9674306 N N
49 C4' H18 C H sing 1.0902926 N N
50 C5' H19 C H sing 1.0896055 N N
51 C5' H20 C H sing 1.0895164 N N
52 OA2 H21 O H sing 0.96687174 N N
53 OA1 H22 O H sing 0.9666737 N N