Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : 6C6    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N1 C N doub 1.32 N Y
2 C2 N3 C N sing 1.32 N Y
3 O2' C2' O C sing 1.43 N N
4 N1 C6 N C sing 1.33 N Y
5 N3 C4 N C doub 1.33 N Y
6 O3' C3' O C sing 1.43 N N
7 C2' C3' C C sing 1.54 N N
8 C2' C1' C C sing 1.54 N N
9 C3' C4' C C sing 1.54 N N
10 C6 N6 C N sing 1.38 N N
11 C6 C5 C C doub 1.4 N Y
12 C4 C5 C C sing 1.41 N Y
13 C4 N9 C N sing 1.37 N Y
14 N6 C61 N C sing 1.47 N N
15 C63 C62 C C sing 1.55 N N
16 C63 C64 C C sing 1.54 N N
17 C5 N7 C N sing 1.35 N Y
18 C1' N9 C N sing 1.46 N N
19 C1' O4' C O sing 1.44 N N
20 N9 C8 N C sing 1.36 N Y
21 C62 C61 C C sing 1.55 N N
22 C4' O4' C O sing 1.44 N N
23 C4' C5' C C sing 1.53 N N
24 C64 C65 C C sing 1.54 N N
25 C61 C65 C C sing 1.54 N N
26 N7 C8 N C doub 1.3 N Y
27 C5' O5' C O sing 1.43 N N
28 O5' PA O P sing 1.61 N N
29 OA3 PA O P doub 1.48 N N
30 OA1 PA O P sing 1.61 N N
31 PA OA2 P O sing 1.61 N N
32 C65 H1 C H sing 1.09 N N
33 C65 H2 C H sing 1.09 N N
34 C64 H3 C H sing 1.09 N N
35 C64 H4 C H sing 1.09 N N
36 C63 H5 C H sing 1.09 N N
37 C63 H6 C H sing 1.09 N N
38 C62 H7 C H sing 1.09 N N
39 C62 H8 C H sing 1.09 N N
40 C61 H9 C H sing 1.09 N N
41 N6 H10 N H sing 0.97 N N
42 C2 H11 C H sing 1.08 N N
43 C8 H12 C H sing 1.08 N N
44 C1' H13 C H sing 1.09 N N
45 C2' H14 C H sing 1.09 N N
46 O2' H15 O H sing 0.97 N N
47 C3' H16 C H sing 1.09 N N
48 O3' H17 O H sing 0.97 N N
49 C4' H18 C H sing 1.09 N N
50 C5' H19 C H sing 1.09 N N
51 C5' H20 C H sing 1.09 N N
52 OA2 H21 O H sing 0.97 N N
53 OA1 H22 O H sing 0.97 N N