Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5PS    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.38 N Y
2 C1 C5 C C doub 1.39 N Y
3 F1 C17 F C sing 1.35 N N
4 N1 C2 N C doub 1.32 N Y
5 N1 C3 N C sing 1.32 N Y
6 O1 C8 O C doub 1.22 N N
7 F2 C20 F C sing 1.35 N N
8 N2 C5 N C sing 1.4 N N
9 N2 C6 N C sing 1.35 N N
10 O2 C6 O C doub 1.21 N N
11 C3 C4 C C doub 1.38 N Y
12 N3 C8 N C sing 1.35 N N
13 N3 C7 N C sing 1.46 N N
14 C4 C5 C C sing 1.39 N Y
15 N4 C23 N C sing 1.37 N Y
16 N4 C24 N C sing 1.38 N Y
17 C6 C7 C C sing 1.51 N N
18 C8 C9 C C sing 1.47 N N
19 C9 C10 C C doub 1.4 N Y
20 C9 C20 C C sing 1.4 N Y
21 C10 C11 C C sing 1.38 N Y
22 C11 C12 C C doub 1.4 N Y
23 C12 C13 C C sing 1.48 N N
24 C12 C19 C C sing 1.39 N Y
25 C13 C14 C C sing 1.39 N Y
26 C13 C18 C C doub 1.39 N Y
27 C14 C15 C C doub 1.38 N Y
28 C15 C16 C C sing 1.38 N Y
29 C16 C17 C C doub 1.38 N Y
30 C17 C18 C C sing 1.38 N Y
31 C19 C20 C C doub 1.38 N Y
32 C21 C22 C C sing 1.51 N N
33 C21 C7 C C sing 1.53 N N
34 C22 C23 C C doub 1.34 N Y
35 C22 C29 C C sing 1.46 N Y
36 C24 C25 C C doub 1.39 N Y
37 C24 C29 C C sing 1.41 N Y
38 C25 C26 C C sing 1.38 N Y
39 C26 C27 C C doub 1.39 N Y
40 C27 C28 C C sing 1.37 N Y
41 C28 C29 C C doub 1.4 N Y
42 C1 H1 C H sing 1.08 N N
43 C2 H2 C H sing 1.08 N N
44 C3 H3 C H sing 1.08 N N
45 N2 HA N H sing 0.97 N N
46 C4 H4 C H sing 1.08 N N
47 N3 HB N H sing 0.97 N N
48 C7 H7 C H sing 1.09 N N
49 N4 HC N H sing 0.97 N N
50 C23 H23 C H sing 1.08 N N
51 C10 H10 C H sing 1.08 N N
52 C11 H11 C H sing 1.08 N N
53 C19 H19 C H sing 1.08 N N
54 C14 H14 C H sing 1.08 N N
55 C18 H18 C H sing 1.08 N N
56 C15 H15 C H sing 1.08 N N
57 C16 H16 C H sing 1.08 N N
58 C21 H211 C H sing 1.09 N N
59 C21 H212 C H sing 1.09 N N
60 C25 H25 C H sing 1.08 N N
61 C26 H26 C H sing 1.08 N N
62 C27 H27 C H sing 1.08 N N
63 C28 H28 C H sing 1.08 N N