Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 50T    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N1 C N sing 1.3203431 N Y
2 C2 N3 C N doub 1.3163787 N Y
3 C4 C5 C C doub 1.404774 N Y
4 C4 N9 C N sing 1.3722135 N Y
5 C4 N3 C N sing 1.3290049 N Y
6 C5 C6 C C sing 1.4053131 N Y
7 C5 N7 C N sing 1.3553679 N Y
8 C6 N1 C N doub 1.3283607 N Y
9 C6 N6 C N sing 1.3835133 N N
10 C8 N9 C N sing 1.3630128 N Y
11 C1' N9 C N sing 1.4653157 N N
12 C8 N7 C N doub 1.3012563 N Y
13 O3B VB O V sing 1.8391163 N N
14 O2' C2' O C sing 1.4295356 N N
15 O2B VB O V sing 1.8400623 N N
16 O3' C3' O C sing 1.4290591 N N
17 C3' C4' C C sing 1.5404736 N N
18 C3' C2' C C sing 1.54771 N N
19 C4' C5' C C sing 1.5301929 N N
20 C4' O4' C O sing 1.4376359 N N
21 C5' O5' C O sing 1.4289147 N N
22 O5' PA O P sing 1.6098596 N N
23 PA O1A P O doub 1.479876 N N
24 PA O2A P O sing 1.609823 N N
25 PA O3A P O sing 1.6102748 N N
26 O3A VB O V sing 1.8405994 N N
27 O1B VB O V sing 1.8400419 N N
28 O4B VB O V sing 1.8400028 N N
29 C2' C1' C C sing 1.5498713 N N
30 C1' O4' C O sing 1.4440835 N N
31 O2A HOA O H sing 0.966954 N N
32 C2 H2 C H sing 1.0799546 N N
33 N6 H61N N H sing 0.97005206 N N
34 N6 H62N N H sing 0.9697531 N N
35 C8 H8 C H sing 1.0793465 N N
36 O3B H3B O H sing 0.96785843 N N
37 O2' H2' O H sing 0.9662479 N N
38 C2' HA C H sing 1.0905582 N N
39 O3' H3' O H sing 0.9661289 N N
40 C3' HB C H sing 1.0901381 N N
41 C4' H4' C H sing 1.0902573 N N
42 C5' H5'1 C H sing 1.0896945 N N
43 C5' H5'2 C H sing 1.089845 N N
44 O1B H1B O H sing 0.9672352 N N
45 O2B H2B O H sing 0.9677608 N N
46 O4B H4B O H sing 0.9669876 N N
47 C1' H1' C H sing 1.0895633 N N