Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 50T    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N1 C N sing 1.32 N Y
2 C2 N3 C N doub 1.32 N Y
3 C4 C5 C C doub 1.4 N Y
4 C4 N9 C N sing 1.37 N Y
5 C4 N3 C N sing 1.33 N Y
6 C5 C6 C C sing 1.41 N Y
7 C5 N7 C N sing 1.36 N Y
8 C6 N1 C N doub 1.33 N Y
9 C6 N6 C N sing 1.38 N N
10 C8 N9 C N sing 1.36 N Y
11 C1' N9 C N sing 1.47 N N
12 C8 N7 C N doub 1.3 N Y
13 O3B VB O V sing 1.84 N N
14 O2' C2' O C sing 1.43 N N
15 O2B VB O V sing 1.84 N N
16 O3' C3' O C sing 1.43 N N
17 C3' C4' C C sing 1.54 N N
18 C3' C2' C C sing 1.55 N N
19 C4' C5' C C sing 1.53 N N
20 C4' O4' C O sing 1.44 N N
21 C5' O5' C O sing 1.43 N N
22 O5' PA O P sing 1.61 N N
23 PA O1A P O doub 1.48 N N
24 PA O2A P O sing 1.61 N N
25 PA O3A P O sing 1.61 N N
26 O3A VB O V sing 1.84 N N
27 O1B VB O V sing 1.84 N N
28 O4B VB O V sing 1.84 N N
29 C2' C1' C C sing 1.55 N N
30 C1' O4' C O sing 1.44 N N
31 O2A HOA O H sing 0.97 N N
32 C2 H2 C H sing 1.08 N N
33 N6 H61N N H sing 0.97 N N
34 N6 H62N N H sing 0.97 N N
35 C8 H8 C H sing 1.08 N N
36 O3B H3B O H sing 0.97 N N
37 O2' H2' O H sing 0.97 N N
38 C2' HA C H sing 1.09 N N
39 O3' H3' O H sing 0.97 N N
40 C3' HB C H sing 1.09 N N
41 C4' H4' C H sing 1.09 N N
42 C5' H5'1 C H sing 1.09 N N
43 C5' H5'2 C H sing 1.09 N N
44 O1B H1B O H sing 0.97 N N
45 O2B H2B O H sing 0.97 N N
46 O4B H4B O H sing 0.97 N N
47 C1' H1' C H sing 1.09 N N