Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
406
Bonds between two atoms of the molecule
Total Number of Bonds: 77
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C1
C41
C
C
sing
1.45
N
N
2
C1
C2
C
C
sing
1.39
N
Y
3
C1
C6
C
C
doub
1.39
N
Y
4
C2
C3
C
C
doub
1.39
N
Y
5
C2
H2
C
H
sing
1.09
N
N
6
C3
C4
C
C
sing
1.39
N
Y
7
C3
H3
C
H
sing
1.09
N
N
8
C4
C11
C
C
sing
1.5
N
N
9
C4
C5
C
C
doub
1.39
N
Y
10
C5
C6
C
C
sing
1.39
N
Y
11
C5
C7
C
C
sing
1.49
N
N
12
C6
H6
C
H
sing
1.09
N
N
13
C7
F8
C
F
sing
1.36
N
N
14
C7
F9
C
F
sing
1.36
N
N
15
C7
F10
C
F
sing
1.36
N
N
16
C11
N12
C
N
sing
1.45
N
N
17
C11
H111
C
H
sing
1.1
N
N
18
C11
H112
C
H
sing
1.1
N
N
19
N12
C13
N
C
sing
1.47
N
N
20
N12
C16
N
C
sing
1.46
N
N
21
C13
C14
C
C
sing
1.53
N
N
22
C13
H131
C
H
sing
1.09
N
N
23
C13
H132
C
H
sing
1.1
N
N
24
C14
C15
C
C
sing
1.53
N
N
25
C14
H141
C
H
sing
1.1
N
N
26
C14
H142
C
H
sing
1.1
N
N
27
C15
C16
C
C
sing
1.52
N
N
28
C15
N17
C
N
sing
1.45
N
N
29
C15
H15
C
H
sing
1.1
N
N
30
C16
H161
C
H
sing
1.1
N
N
31
C16
H162
C
H
sing
1.09
N
N
32
N17
C18
N
C
sing
1.47
N
N
33
N17
C19
N
C
sing
1.47
N
N
34
C18
H181
C
H
sing
1.09
N
N
35
C18
H182
C
H
sing
1.09
N
N
36
C18
H183
C
H
sing
1.09
N
N
37
C19
H191
C
H
sing
1.09
N
N
38
C19
H192
C
H
sing
1.09
N
N
39
C19
H193
C
H
sing
1.09
N
N
40
N20
C25
N
C
sing
1.35
N
Y
41
N20
C21
N
C
doub
1.35
N
Y
42
C21
N22
C
N
sing
1.35
N
Y
43
C21
H21
C
H
sing
1.08
N
N
44
N22
C23
N
C
doub
1.35
N
Y
45
C23
C24
C
C
sing
1.38
N
Y
46
C23
H23
C
H
sing
1.09
N
N
47
C24
C26
C
C
sing
1.44
N
Y
48
C24
C25
C
C
doub
1.38
N
Y
49
C25
H25
C
H
sing
1.09
N
N
50
C26
C31
C
C
doub
1.38
N
Y
51
C26
N27
C
N
sing
1.35
N
Y
52
N27
C28
N
C
doub
1.35
N
Y
53
C28
N32
C
N
sing
1.41
N
N
54
C28
N29
C
N
sing
1.35
N
Y
55
N29
C30
N
C
doub
1.35
N
Y
56
C30
C31
C
C
sing
1.38
N
Y
57
C30
H30
C
H
sing
1.08
N
N
58
C31
H31
C
H
sing
1.08
N
N
59
N32
C38
N
C
sing
1.41
N
N
60
N32
H32
N
H
sing
1.01
N
N
61
C33
C34
C
C
sing
1.38
N
Y
62
C33
C38
C
C
doub
1.39
N
Y
63
C33
H33
C
H
sing
1.09
N
N
64
C34
C35
C
C
doub
1.38
N
Y
65
C34
N40
C
N
sing
1.42
N
N
66
C35
C36
C
C
sing
1.4
N
Y
67
C35
H35
C
H
sing
1.09
N
N
68
C36
C37
C
C
doub
1.4
N
Y
69
C36
H36
C
H
sing
1.09
N
N
70
C37
C39
C
C
sing
1.49
N
N
71
C37
C38
C
C
sing
1.4
N
Y
72
C39
H391
C
H
sing
1.1
N
N
73
C39
H392
C
H
sing
1.1
N
N
74
C39
H393
C
H
sing
1.1
N
N
75
N40
C41
N
C
sing
1.4
N
N
76
N40
H40
N
H
sing
1.02
N
N
77
C41
O42
C
O
doub
1.24
N
N