Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 365    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3P P O P sing 1.6105356 N N
2 B O1 B O sing 1.3710442 N N
3 B C12 B C sing 1.5538552 N N
4 B O2' B O sing 1.3730353 N N
5 B O3' B O sing 1.3726825 N N
6 P O1P P O doub 1.4793167 N N
7 P O2P P O sing 1.609659 N N
8 P O5' P O sing 1.6097021 N N
9 N1 C2 N C doub 1.3199171 N Y
10 N1 C6 N C sing 1.3284532 N Y
11 O1 C10 O C sing 1.4395506 N N
12 C2 N3 C N sing 1.3173906 N Y
13 N3 C4 N C doub 1.3286037 N Y
14 C4 C5 C C sing 1.4058225 N Y
15 C4 N9 C N sing 1.3718779 N Y
16 C5 C6 C C doub 1.4051939 N Y
17 C5 N7 C N sing 1.3545438 N Y
18 C6 N6 C N sing 1.3841188 N N
19 N7 C8 N C doub 1.3022016 N Y
20 C8 N9 C N sing 1.3635373 N Y
21 N9 C1' N C sing 1.4650273 N N
22 C1' C2' C C sing 1.5433992 N N
23 C1' O4' C O sing 1.4434282 N N
24 C10 C11 C C sing 1.5099527 N N
25 C10 C17 C C sing 1.5293351 N N
26 C11 C12 C C doub 1.3888776 N Y
27 C11 C13 C C sing 1.377036 N Y
28 C12 C16 C C sing 1.3820293 N Y
29 C13 C14 C C doub 1.3842211 N Y
30 C14 C15 C C sing 1.3817312 N Y
31 C15 C16 C C doub 1.387834 N Y
32 C16 O19 C O sing 1.3591479 N N
33 C17 N18 C N sing 1.4694822 N N
34 O19 C20 O C sing 1.4286637 N N
35 C2' O2' C O sing 1.4451221 N N
36 C2' C3' C C sing 1.5571955 N N
37 C20 C21 C C sing 1.5296997 N N
38 C21 C22 C C sing 1.5299236 N N
39 C22 O23 C O sing 1.4288492 N N
40 C3' O3' C O sing 1.4443424 N N
41 C3' C4' C C sing 1.5435913 N N
42 C4' O4' C O sing 1.4437722 N N
43 C4' C5' C C sing 1.5303631 N N
44 C5' O5' C O sing 1.4290518 N N
45 C2 H2 C H sing 1.0798829 N N
46 N6 HN6 N H sing 0.970016 N N
47 N6 HN6A N H sing 0.9695963 N N
48 C8 H8 C H sing 1.0796634 N N
49 C1' H1' C H sing 1.0898894 N N
50 C10 H10 C H sing 1.0900284 N N
51 C13 H13 C H sing 1.0804633 N N
52 C14 H14 C H sing 1.0800903 N N
53 C15 H15 C H sing 1.0804207 N N
54 C17 H17 C H sing 1.090117 N N
55 C17 H17A C H sing 1.0910738 N N
56 N18 HN18 N H sing 1.0086174 N N
57 N18 HN1A N H sing 1.0099277 N N
58 C2' H2' C H sing 1.0900431 N N
59 C20 H20 C H sing 1.0907286 N N
60 C20 H20A C H sing 1.0900904 N N
61 C21 H21 C H sing 1.0907286 N N
62 C21 H21A C H sing 1.0900904 N N
63 C22 H22 C H sing 1.0897586 N N
64 C22 H22A C H sing 1.0900904 N N
65 O23 HO23 O H sing 0.96681434 N N
66 C3' H3' C H sing 1.0906929 N N
67 C4' H4' C H sing 1.0900187 N N
68 C5' H5' C H sing 1.0898188 N N
69 C5' H5'A C H sing 1.090112 N N
70 O3P HOP3 O H sing 0.96775824 N N
71 O2P HOP2 O H sing 0.96668816 N N