Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2TM    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N4 C4 N C sing 1.38 N N
2 N3 C4 N C doub 1.33 N N
3 N3 C2 N C sing 1.33 N N
4 O2 C2 O C doub 1.22 N N
5 C4 C5 C C sing 1.41 N N
6 C2 N1 C N sing 1.35 N N
7 C5 C6 C C doub 1.35 N N
8 N1 C6 N C sing 1.36 N N
9 N1 C1' N C sing 1.47 N N
10 O2' C2' O C sing 1.43 N N
11 C2' C1' C C sing 1.55 N N
12 C2' C3' C C sing 1.55 N N
13 C1' O4' C O sing 1.44 N N
14 C3' O3' C O sing 1.43 N N
15 C3' C4' C C sing 1.54 N N
16 O4' C4' O C sing 1.44 N N
17 C4' C5' C C sing 1.53 N N
18 C5' O5' C O sing 1.43 N N
19 O5' PA O P sing 1.61 N N
20 O1A PA O P doub 1.48 N N
21 PA O2A P O sing 1.61 N N
22 PA C1 P C sing 1.82 N N
23 O2B PB O P doub 1.48 N N
24 C1 PB C P sing 1.82 N N
25 PB O3B P O sing 1.61 N N
26 PB O1B P O sing 1.61 N N
27 O3B PG O P sing 1.61 N N
28 PG O1G P O doub 1.48 N N
29 PG O2G P O sing 1.61 N N
30 PG O3G P O sing 1.61 N N
31 C5' H1 C H sing 1.09 N N
32 C5' H2 C H sing 1.09 N N
33 C4' H3 C H sing 1.09 N N
34 C3' H4 C H sing 1.09 N N
35 O3' H5 O H sing 0.97 N N
36 C2' H6 C H sing 1.09 N N
37 O2' H7 O H sing 0.97 N N
38 C1' H8 C H sing 1.09 N N
39 C5 H9 C H sing 1.08 N N
40 C6 H10 C H sing 1.08 N N
41 O3G H11 O H sing 0.97 N N
42 O2G H12 O H sing 0.97 N N
43 O1B H13 O H sing 0.97 N N
44 O2A H14 O H sing 0.97 N N
45 N4 H15 N H sing 0.97 N N
46 N4 H16 N H sing 0.97 N N
47 C1 H17 C H sing 1.09 N N
48 C1 H18 C H sing 1.09 N N