Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2GM    

Bonds between two atoms of the molecule

Total Number of Bonds: 87


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 C21 C C sing 1.53 N N
2 C38 C39 C C sing 1.56 N N
3 C38 C37 C C sing 1.55 N N
4 C39 C40 C C sing 1.54 N N
5 O43 C21 O C sing 1.43 N N
6 O43 C41 O C sing 1.42 N N
7 C40 C41 C C sing 1.53 N N
8 C40 N36 C N sing 1.48 N N
9 C21 N20 C N sing 1.47 N N
10 C21 C23 C C sing 1.51 N N
11 N20 C18 N C sing 1.35 N N
12 C37 N36 C N sing 1.47 N N
13 C41 O42 C O sing 1.43 N N
14 C41 N25 C N sing 1.47 N N
15 C8 N6 C N sing 1.47 N N
16 C8 C9 C C sing 1.53 N N
17 C7 N6 C N sing 1.47 N N
18 N36 C34 N C sing 1.35 N N
19 N6 C5 N C sing 1.47 N N
20 C18 C9 C C sing 1.51 N N
21 C18 O19 C O doub 1.21 N N
22 C9 C10 C C sing 1.53 N N
23 C23 N25 C N sing 1.35 N N
24 C23 O24 C O doub 1.21 N N
25 N25 C26 N C sing 1.47 N N
26 C34 C26 C C sing 1.51 N N
27 C34 O35 C O doub 1.21 N N
28 C5 C4 C C sing 1.54 N N
29 C5 C11 C C sing 1.53 N N
30 C4 C3 C C sing 1.51 N N
31 C10 C11 C C sing 1.53 N N
32 C26 C27 C C sing 1.53 N N
33 C11 C12 C C sing 1.5 N N
34 C3 C2 C C doub 1.32 N Y
35 C3 C17 C C sing 1.46 N Y
36 C27 C28 C C sing 1.51 N N
37 C12 C17 C C doub 1.4 N Y
38 C12 C13 C C sing 1.36 N Y
39 C2 N1 C N sing 1.39 N Y
40 C17 C16 C C sing 1.4 N Y
41 C28 C29 C C doub 1.38 N Y
42 C28 C33 C C sing 1.38 N Y
43 C29 C30 C C sing 1.38 N Y
44 C33 C32 C C doub 1.38 N Y
45 C13 C14 C C doub 1.4 N Y
46 N1 C16 N C sing 1.36 N Y
47 C30 C31 C C doub 1.38 N Y
48 C16 C15 C C doub 1.39 N Y
49 C32 C31 C C sing 1.38 N Y
50 C14 C15 C C sing 1.39 N Y
51 C10 H1 C H sing 1.09 N N
52 C10 H2 C H sing 1.09 N N
53 C11 H3 C H sing 1.09 N N
54 C13 H4 C H sing 1.08 N N
55 C14 H5 C H sing 1.08 N N
56 C15 H6 C H sing 1.08 N N
57 N1 H7 N H sing 0.97 N N
58 C2 H8 C H sing 1.08 N N
59 C4 H9 C H sing 1.09 N N
60 C4 H10 C H sing 1.09 N N
61 C5 H11 C H sing 1.09 N N
62 C7 H13 C H sing 1.09 N N
63 C7 H14 C H sing 1.09 N N
64 C7 H15 C H sing 1.09 N N
65 C8 H16 C H sing 1.09 N N
66 C8 H17 C H sing 1.09 N N
67 C9 H18 C H sing 1.09 N N
68 N20 H19 N H sing 0.97 N N
69 C22 H20 C H sing 1.09 N N
70 C22 H21 C H sing 1.09 N N
71 C22 H22 C H sing 1.09 N N
72 O42 H23 O H sing 0.97 N N
73 C40 H24 C H sing 1.09 N N
74 C39 H25 C H sing 1.09 N N
75 C39 H26 C H sing 1.09 N N
76 C38 H27 C H sing 1.09 N N
77 C38 H28 C H sing 1.09 N N
78 C37 H29 C H sing 1.09 N N
79 C37 H30 C H sing 1.09 N N
80 C26 H31 C H sing 1.09 N N
81 C27 H32 C H sing 1.09 N N
82 C27 H33 C H sing 1.09 N N
83 C29 H34 C H sing 1.08 N N
84 C30 H35 C H sing 1.08 N N
85 C31 H36 C H sing 1.08 N N
86 C32 H37 C H sing 1.08 N N
87 C33 H38 C H sing 1.08 N N