Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 25L    

Bonds between two atoms of the molecule

Total Number of Bonds: 123


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C6 N C sing 1.33 N Y
3 C2 N3 C N sing 1.32 N Y
4 N3 C4 N C doub 1.33 N Y
5 C4 C5 C C sing 1.41 N Y
6 C4 N9 C N sing 1.37 N Y
7 C5 C6 C C doub 1.41 N Y
8 C5 N7 C N sing 1.35 N Y
9 C6 N6 C N sing 1.38 N N
10 N7 C8 N C doub 1.3 N Y
11 C8 N9 C N sing 1.36 N Y
12 N9 C1' N C sing 1.47 N N
13 C1' C2' C C sing 1.55 N N
14 C1' O4' C O sing 1.44 N N
15 C2' O2' C O sing 1.43 N N
16 C2' C3' C C sing 1.55 N N
17 C3' O3' C O sing 1.43 N N
18 C3' C4' C C sing 1.54 N N
19 C4' O4' C O sing 1.44 N N
20 C4' C5' C C sing 1.53 N N
21 C5' O5' C O sing 1.43 N N
22 O5' PCU O P sing 1.61 N N
23 NAB CBV N C sing 1.38 N N
24 NAC CBW N C sing 1.38 N N
25 OAD PCS O P doub 1.48 N N
26 OAE PCT O P doub 1.48 N N
27 OAF PCU O P doub 1.48 N N
28 OAG PCV O P doub 1.48 N N
29 OAH PCW O P doub 1.48 N N
30 OAK CCF O C sing 1.43 N N
31 OAL CCG O C sing 1.43 N N
32 OAM PCT O P sing 1.61 N N
33 OAN PCS O P sing 1.61 N N
34 OAO PCS O P sing 1.61 N N
35 OAP PCU O P sing 1.61 N N
36 OAQ PCV O P sing 1.61 N N
37 OAR PCW O P sing 1.61 N N
38 CAT NBC C N doub 1.32 N Y
39 CAT NBF C N sing 1.32 N Y
40 CAU NBD C N doub 1.32 N Y
41 CAU NBG C N sing 1.32 N Y
42 CAW NBI C N doub 1.3 N Y
43 CAW NCQ C N sing 1.36 N Y
44 CAX NBJ C N doub 1.3 N Y
45 CAX NCR C N sing 1.36 N Y
46 CAY OBK C O sing 1.43 N N
47 CAY CCI C C sing 1.53 N N
48 CBA OBM C O sing 1.43 N N
49 CBA CCJ C C sing 1.53 N N
50 NBC CBV N C sing 1.33 N Y
51 NBD CBW N C sing 1.33 N Y
52 NBF CCB N C doub 1.33 N Y
53 NBG CCC N C doub 1.33 N Y
54 NBI CBY N C sing 1.35 N Y
55 NBJ CBZ N C sing 1.35 N Y
56 OBK PCT O P sing 1.61 N N
57 OBM PCV O P sing 1.61 N N
58 OBO CCI O C sing 1.44 N N
59 OBO CCN O C sing 1.44 N N
60 OBP CCJ O C sing 1.44 N N
61 OBP CCO O C sing 1.44 N N
62 OBQ CCK O C sing 1.43 N N
63 OBQ PCV O P sing 1.61 N N
64 OBR CCL O C sing 1.43 N N
65 OBR PCU O P sing 1.61 N N
66 OBS PCS O P sing 1.61 N N
67 OBS PCW O P sing 1.61 N N
68 OBT PCT O P sing 1.61 N N
69 OBT PCW O P sing 1.61 N N
70 CBV CBY C C doub 1.4 N Y
71 CBW CBZ C C doub 1.41 N Y
72 CBY CCB C C sing 1.41 N Y
73 CBZ CCC C C sing 1.4 N Y
74 CCB NCQ C N sing 1.37 N Y
75 CCC NCR C N sing 1.37 N Y
76 CCF CCI C C sing 1.55 N N
77 CCF CCK C C sing 1.54 N N
78 CCG CCJ C C sing 1.55 N N
79 CCG CCL C C sing 1.54 N N
80 CCK CCN C C sing 1.55 N N
81 CCL CCO C C sing 1.54 N N
82 CCN NCQ C N sing 1.46 N N
83 CCO NCR C N sing 1.47 N N
84 C2 H2 C H sing 1.08 N N
85 N6 HN6 N H sing 0.97 N N
86 N6 HN6A N H sing 0.97 N N
87 C8 H8 C H sing 1.08 N N
88 C1' H1' C H sing 1.09 N N
89 C2' H2' C H sing 1.09 N N
90 O2' HO2' O H sing 0.97 N N
91 C3' H3' C H sing 1.09 N N
92 O3' HO3' O H sing 0.97 N N
93 C4' H4' C H sing 1.09 N N
94 C5' H5' C H sing 1.09 N N
95 C5' H5'A C H sing 1.09 N N
96 NAB HNAB N H sing 0.97 N N
97 NAB HNAA N H sing 0.97 N N
98 NAC HNAC N H sing 0.97 N N
99 NAC HNAD N H sing 0.97 N N
100 OAK HOAK O H sing 0.97 N N
101 OAL HOAL O H sing 0.97 N N
102 OAM HOAM O H sing 0.97 N N
103 OAN HOAN O H sing 0.97 N N
104 OAO HOAO O H sing 0.97 N N
105 OAP HOAP O H sing 0.97 N N
106 OAQ HOAQ O H sing 0.97 N N
107 OAR HOAR O H sing 0.97 N N
108 CAT HAT C H sing 1.08 N N
109 CAU HAU C H sing 1.08 N N
110 CAW HAW C H sing 1.08 N N
111 CAX HAX C H sing 1.08 N N
112 CAY HAY C H sing 1.09 N N
113 CAY HAYA C H sing 1.09 N N
114 CBA HBA C H sing 1.09 N N
115 CBA HBAA C H sing 1.09 N N
116 CCF HCF C H sing 1.09 N N
117 CCG HCG C H sing 1.09 N N
118 CCI HCI C H sing 1.09 N N
119 CCJ HCJ C H sing 1.09 N N
120 CCK HCK C H sing 1.09 N N
121 CCL HCL C H sing 1.09 N N
122 CCN HCN C H sing 1.09 N N
123 CCO HCO C H sing 1.09 N N