Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : 20M    

Bonds between two atoms of the molecule

Total Number of Bonds: 66


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C33 C34 C C sing 1.55 N N
2 C33 C32 C C sing 1.55 N N
3 C34 N30 C N sing 1.48 N N
4 C32 C31 C C sing 1.54 N N
5 N30 C31 N C sing 1.47 N N
6 N30 C27 N C sing 1.47 N N
7 C26 C25 C C sing 1.53 N N
8 C26 C27 C C sing 1.53 N N
9 C25 N24 C N sing 1.47 N N
10 C27 C28 C C sing 1.53 N N
11 C28 C29 C C sing 1.53 N N
12 O23 S21 O S doub 1.42 N N
13 N24 C29 N C sing 1.47 N N
14 N24 S21 N S sing 1.66 N N
15 S21 O22 S O doub 1.42 N N
16 S21 C3 S C sing 1.76 N N
17 C2 C3 C C doub 1.38 N Y
18 C2 C1 C C sing 1.38 N Y
19 C3 C4 C C sing 1.38 N Y
20 C1 C6 C C doub 1.38 N Y
21 C4 C5 C C doub 1.38 N Y
22 C6 C5 C C sing 1.38 N Y
23 C6 C7 C C sing 1.51 N N
24 C7 N8 C N sing 1.46 N N
25 N20 S17 N S sing 1.67 N N
26 N20 C9 N C sing 1.38 N N
27 O18 S17 O S doub 1.42 N N
28 N8 C9 N C sing 1.37 N N
29 O19 S17 O S doub 1.42 N N
30 S17 C16 S C sing 1.77 N N
31 C9 N10 C N doub 1.3 N N
32 N10 C11 N C sing 1.35 N N
33 C16 C11 C C doub 1.4 N Y
34 C16 C15 C C sing 1.37 N Y
35 C11 C12 C C sing 1.4 N Y
36 C15 N14 C N doub 1.33 N Y
37 C12 C13 C C doub 1.38 N Y
38 N14 C13 N C sing 1.32 N Y
39 C1 H1 C H sing 1.08 N N
40 C2 H2 C H sing 1.08 N N
41 C4 H3 C H sing 1.08 N N
42 C5 H4 C H sing 1.08 N N
43 C7 H5 C H sing 1.09 N N
44 C7 H6 C H sing 1.09 N N
45 N8 H7 N H sing 0.97 N N
46 C12 H8 C H sing 1.08 N N
47 C13 H9 C H sing 1.08 N N
48 C15 H10 C H sing 1.08 N N
49 N20 H11 N H sing 0.97 N N
50 C25 H12 C H sing 1.09 N N
51 C25 H13 C H sing 1.09 N N
52 C26 H14 C H sing 1.09 N N
53 C26 H15 C H sing 1.09 N N
54 C27 H16 C H sing 1.09 N N
55 C28 H17 C H sing 1.09 N N
56 C28 H18 C H sing 1.09 N N
57 C29 H19 C H sing 1.09 N N
58 C29 H20 C H sing 1.09 N N
59 C31 H22 C H sing 1.09 N N
60 C31 H23 C H sing 1.09 N N
61 C32 H24 C H sing 1.09 N N
62 C32 H25 C H sing 1.09 N N
63 C33 H26 C H sing 1.09 N N
64 C33 H27 C H sing 1.09 N N
65 C34 H28 C H sing 1.09 N N
66 C34 H29 C H sing 1.09 N N